PeptideClassifier statistics

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PeptideClassifier specifications

Information


Unique identifier OMICS_09174
Name PeptideClassifier
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

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Publications for PeptideClassifier

PeptideClassifier in publications

 (4)
PMCID: 4842269
PMID: 27107716
DOI: 10.1186/s12864-016-2602-9

[…] target-decoy search strategy a stringent score cutoff was determined that resulted in an estimated fdr of 0.1 % at the peptide spectrum match (psm) level. psms above this cutoff were subjected to a peptideclassifier analysis [] and only peptides that unambiguously identify one protein, or that imply a longer or shorter from of an annotated protein (extending the concept of gerster et al. []), […]

PMCID: 3759415
PMID: 24023794
DOI: 10.1371/journal.pone.0072939

[…] based on the target-decoy search strategy , a stringent score cutoff was determined that resulted in an estimated fdr of less than 0.2% at the psm level. psms above this cutoff were subjected to a peptideclassifier analysis and only peptides that unambiguously identify one protein (either class 1a or 3a) were considered. we furthermore required at least 3 independent spectra or two spectra […]

PMCID: 3688620
PMID: 23840627
DOI: 10.1371/journal.pone.0067208

[…] search strategy a stringent score cutoff was determined that resulted in an estimated false discovery rate (fdr) of less than 0.2% at the psm level. psms above this cutoff were classified with the peptideclassifier software ., a minimal list of unambiguous protein identifications (based on class 1a, 1b, or 3a peptides) and protein group identifications that imply one gene model (based on class […]

PMCID: 3502180
PMID: 23185499
DOI: 10.1371/journal.pone.0049966

[…] 2. psms were post-processed with percolator and stringently filtered such that the final fdr at the psm level was below 0,1%. all psms identified at this stringent fdr were subjected to a peptideclassifier analysis . only peptides that unambiguously identify one protein (either class 1a or 3a) were used to generate a minimal list of protein identifications, while shared peptides […]


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