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Protocols

PeptideMass specifications

Information


Unique identifier OMICS_20186
Name PeptideMass
Interface Web user interface
Restrictions to use None
Input data Some protein identifier, ID, or accession number, or an amino acid sequence.
Input format UniProtKB
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PeptideMass

PeptideMass citations

 (70)
call_split

Customized Peptide Biomaterial Synthesis via an Environment Reliant Auto Programmer Stigmergic Approach

2018
PMCID: 5951493
PMID: 29659507
DOI: 10.3390/ma11040609
call_split See protocol

[…] the 3D structure of the protein into a primary structure with the following amino acid sequence: This primary structure of protein was broken down to 10 possible peptide fragments by α-chymotrypsin (PeptideMass-ExPASy bioinformatics resource portal). The fragments with their molecular weight are presented in . The fragments with cysteine amino acid were then stigmergized to synthesize new peptide […]

library_books

AOX1 Subfamily Gene Members in Olea europaea cv. “Galega Vulgar”—Gene Characterization and Expression of Transcripts during IBA Induced in Vitro Adventitious Rooting

2018
Int J Mol Sci
PMCID: 5855819
PMID: 29462998
DOI: 10.3390/ijms19020597

[…] dtu.dk/services/TargetP/) using the translated peptide corresponding to exon 1. The prediction of putative isoelectric point (pI) and the molecular weight was obtained using the freely available tool PeptideMass at the Expasy software (http://web.expasy.org/peptide_mass/). […]

library_books

Alternative splicing originates different domain structure organization of Lutzomyia longipalpis chitinases

2018
PMCID: 5722264
PMID: 29236932
DOI: 10.1590/0074-02760170179

[…] whereas in the L4 larvae sample the same antibody revealed two bands (). The molecular weight range of the observed bands was within the expected for the deduced LlChit1 isoforms predicted by Ex-PASy PeptideMass tool (LlChit1-A: 53.19 kDa, LlChit1-B: 44.05 and LlChit1-C: 53.5 kDa), considering that we did not expect forms A and C to separate in the gel. […]

library_books

MALDI Mass Spectrometry Imaging: A Novel Tool for the Identification and Classification of Amyloidosis

2017
Proteomics
PMCID: 5725723
PMID: 28994248
DOI: 10.1002/pmic.201700236

[…] lace Congo red staining. We investigated 16 amyloid cases including six different types of amyloid and five different histoanatomical locations. For all cases, peptides derived from in silico digest (PeptideMass, www.expasy.org) and recently identified peptide masses, formed by tryptic on‐tissue digestion of ApoE, SAP, and VTN were detected with mass errors below 35 ppm (Table S1, Supporting Info […]

library_books

Convergent evolution of plant and animal embryo defences by hyperstable non digestible storage proteins

2017
Sci Rep
PMCID: 5696525
PMID: 29158565
DOI: 10.1038/s41598-017-16185-9

[…] To determine PmPV1’s susceptibility to digestion by the gastrointestinal tract enzymes and proteinase K, an in silico digestion was performed using on-line software ExPaSy PeptideMass and MS-Digest (http://prospector.ucsf.edu), comparing the data with BSA. The number of cutting sites was normalized to a 20 kDa subunit. […]

call_split

Automated Solid Phase Protein Modification with Integrated Enzymatic Digest for Reaction Validation: Application of a Compartmented Microfluidic Reactor for Rapid Optimization and Analysis of Protein Biotinylation

2017
Front Bioeng Biotechnol
PMCID: 5693853
PMID: 29181376
DOI: 10.3389/fbioe.2017.00072
call_split See protocol

[…] ide Mass Fingerprint” (Perkins et al., ). This software calculates which organism correlates most with the entered data. For the determination of peptide fragments after an enzymatic digest the tool “PeptideMass” from Expasy was used (Wilkins et al., ). […]

Citations

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PeptideMass institution(s)
Central Clinical Chemistry Laboratory, Geneva University Hospital, Geneva, Switzerland; Medical Biochemistry Department, University of Geneva, Geneva, Switzerland; Medical Informatics Division, Geneva University Hospital, Geneva, Switzerland
PeptideMass funding source(s)
Supported by the Helmut Horten Foundation; by FORMITT; the Swiss National Fund for Scientific Research (grant 31-33658-92), and the Inter-Maritime and Montus Foundation.

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