PeptIdent statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left 2D gel image analysis chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PeptIdent specifications

Information


Unique identifier OMICS_15657
Name PeptIdent
Interface Web user interface
Restrictions to use None
Output data A virtual, annotated "2-D map" and a 3-D image.
Computer skills Basic
Stability No
Maintained No

Publication for PeptIdent

PeptIdent in publications

 (13)
PMCID: 5172349
PMID: 15626334
DOI: 10.1016/S1672-0229(03)01008-8

[…] and calibrated with tpck-trypsin auto-degraded peak (m/z=1993.9772 da). shows the pmf maps of the protein-spots n8 and t5. the pmf data were used to search the swiss-prot and trembl databases with peptident software. the resulting protein was identified by comprehensively considering the corresponding experimental pi, mr, the number of matched-peptides, and the sequence coverage (, ), 65.1% […]

PMCID: 4302698
PMID: 25539738
DOI: 10.1186/s12920-014-0069-6

[…] san jose, ca, usa). for maldi-tof ms, peptide mass fingerprint (pmf) data were generated; pmf data were used to identify protein with a search of the uniprot database with search software peptident (http://us.expasy.org/tools/peptident.html) and mascot (http://www.matrixscience.com). for lc-esi-q-it ms, tandem mass spectrometry (ms/ms) data were generated; ms/ms data were used […]

PMCID: 4264155
PMID: 25375189
DOI: 10.3390/ijms151120054

[…] (thermo electron, bremen, germany). a trypsin-fragment peak served as an internal standard for mass calibration. proteins were identified with peptide mass fingerprinting data by searching software peptident [], and the searching parameters were set (for details please see materials and methods section). the results are summarized in ., to further verify that the proteomically identified […]

PMCID: 3998108
PMID: 24650571
DOI: 10.1186/1878-5085-5-5

[…] of the swiss-prot database. for protein search, monoisotopic masses were used and a mass tolerance of ≈ 0.0075% was allowed. the protein search was performed with software which is similar to the peptident software on the expasy server (http://expasy.hcuge.ch/sprot/peptident.html)., the protein content of each sample was determined by the method of bradford []. for western blot analysis, […]

PMCID: 3909180
PMID: 24498091
DOI: 10.1371/journal.pone.0087386

[…] germany) and identified by peptide mass fingerprinting (pmf) searching national centre for biotechnology information and swissprot databases using the ms-fit (http://prospector.ucsf.edu/) and peptident software (http://au.expasy.org/tools/peptident.html), respectively., sodium dodecyl-sulfate (sds)-page and immunostaining were used for all subsequent studies . protein samples […]


To access a full list of publications, you will need to upgrade to our premium service.

PeptIdent institution(s)
Swiss Institute of Bioinformatics, University Medical Center, Geneva, Switzerland; Central Clinical Chemistry Laboratory, Geneva University Hospital, Geneva, Switzerland
PeptIdent funding source(s)
Supported by the Helmut Horten Foundation, by the Swiss National Fund for Scientific Research (Grants 32-49314.96 and 31- 52974.97) and the Montus Foundation.

PeptIdent reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PeptIdent