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PeptidePicker specifications


Unique identifier OMICS_13604
Name PeptidePicker
Interface Application programming interface
Restrictions to use None
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus


  • person_outline Christoph Borchers <>

Publication for PeptidePicker

PeptidePicker citations


Towards reproducible MRM based biomarker discovery using dried blood spots

PMCID: 5366927
PMID: 28345601
DOI: 10.1038/srep45178

[…] proteomics studies, where reproducibility is vital. the selection of peptides and interference-free transitions is also crucial for protein quantification. various resources are available including peptidepicker, peptidetracker, srmatlas, peptideatlas, passel and passport protein assay portal. these tools assist researchers by assembling publically available experimental data into databases. […]


A Multiplexed Cytokeratin Analysis Using Targeted Mass Spectrometry Reveals Specific Profiles in Cancer Related Pleural Effusions12

PMCID: 4954941
PMID: 27435923
DOI: 10.1016/j.neo.2016.06.002

[…] manufacturer’s instructions for the microplate plate format., peptide selection for mrm analysis was performed according to the criteria described previously by manual selection and the aid of the peptidepicker software . in brief, chosen proteotypic peptides met the following conditions: sequence uniqueness in the human proteome; numerous observations in spectral libraries; length […]


Exploring the potential of public proteomics data

PMCID: 4738454
PMID: 26449181
DOI: 10.1002/pmic.201500295

[…] proteins in a given instrumental setup can be found. note that it is also possible to develop tools to look for novel transitions in publicly available shotgun datasets. for example, mrmaid , peptidepicker , , and proteomicsdb do this by reusing identification data coming from pride and other sources., one particular type of data reuse, already popular in other disciplines, is to analyze […]

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PeptidePicker institution(s)
University of Victoria — Genome British Columbia Proteomics Centre, University of Victoria, Victoria, BC, Canada; Center for Proteomics and Metabolomics, Leiden University Medical Center, Netherlands; Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland; Department of Biochemistry & Microbiology, University of Victoria, Victoria, BC, Canada
PeptidePicker funding source(s)
This work was supported by the Genome Canada and Genome British Columbia, the UVic-Genome British Columbia Proteomics Centre and the Dutch Organization for Scientific Research (Nederlandse Organisatie voor Wetenschappelijk Onderzoek, NWO) grants Q16 NRG-2010.06 and VI-917.11.398.

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