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pepXMLTab specifications

Information


Unique identifier OMICS_19079
Name pepXMLTab
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data A peptide-spectrum-matching tabular file.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.10.0
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainers


  • person_outline Xiaojing Wang <>
  • person_outline Bing Zhang <>

Additional information


http://www.bioconductor.org/packages/release/bioc/html/pepXMLTab.html

Publication for pepXMLTab

pepXMLTab in publication

PMCID: 5941328
PMID: 29739327
DOI: 10.1186/s12870-018-1304-7

[…] (release-2015_07) (http://www.uniprot.org/uniprot) [, ] using the peptideprophet tool in trans-proteomic pipeline software (http://www.proteomecenter.org) []. the matching results were obtain using pepxmltab software. the following search parameter settings were used: peptide tolerance, ± 20 ppm and tandem mass spectrometry tolerance, 0.1 da. a peptide was required to have at least a single […]


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pepXMLTab institution(s)
Department of Biomedical Informatics, Department of Biochemistry, Department of Cancer Biology, Vanderbilt University, School of Medicine, Nashville, TN, USA; Jim Ayers Institute for Precancer Detection and Diagnosis, Vanderbilt-Ingram Cancer Center, Nashville, TN, USA
pepXMLTab funding source(s)
Supported by the National Institutes of Health grant U24CA159988.

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