perEditor specifications

Unique identifier:
OMICS_16538
Interface:
Command line interface
Input data:
A reference DNA sequence, a file containing SNPs and indels information in VCF, the maternal or paternal allele used to build the new reference sequence, the particular individual among all the samples presented in the VCF file.
Output data:
The maternal and paternal alleles of the individual genome.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, VCF
Output format:
FASTA
Programming languages:
C++
Stability:
Stable

versioning

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perEditor distribution

download

perEditor support

Documentation

Maintainer

  • Sheng Zhong <>

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Credits

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Publications

Institution(s)

Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA

Funding source(s)

This work was supported by NIH DP2-OD007417, NSF DBI 08-45823, NSF DBI 09-60583.

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