Allows to visualize amino acid residues belonging to the interface between proteins chains and to construct data sets of protein-protein interface residues (IR). ProtInDb stores protein-protein IR extracted from protein complexes in the Protein Data Bank (PDB). Users can build data sets from their list of proteins or from those in the database. It can be used to perform computational analyses and to train and test predictors of protein-protein interaction (PPI) sites.
A nonredundant database to compute knowledge-based asymmetric cross-membrane potentials from the per-residue distributions of C(beta), C(gamma) and functional group atoms. Hence, focusing on the uniqueness of membrane-associated proteins and peptides, nrDB quantitatively parameterizes their cross-membrane propensity, thus facilitating structural refinement, characterization, prediction, and design.
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