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PERMORY specifications


Unique identifier OMICS_07229
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Parallelization MPI
Computer skills Advanced
Version 1.1.0
Stability No
Maintained No


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Publications for PERMORY

PERMORY citations


Bovine Genome wide Association Study for Genetic Elements to Resist the Infection of Foot and mouth Disease in the Field

Asian-Australas J Anim Sci
PMCID: 4283160
PMID: 25557811
DOI: 10.5713/ajas.14.0383

[…] in holstein cattle. among 624532 snp after quality control, we found that 11 snps on 3 chromosomes (chr17, 22, and 15) were significantly associated with the trait at the p.adjust <0.05 after permory test. most significantly associated snps were located on chromosome 17, around the genes myosin xviiib and seizure related 6 homolog (mouse)-like, which were associated with lung cancer. […]


Power Analysis of C TDT for Small Sample Size Genome Wide Association Studies by the Joint Use of Case Parent Trios and Pairs

PMCID: 3659481
PMID: 23737858
DOI: 10.1155/2013/235825

[…] study. furthermore, the number of snps in the study increases the computational burden. although the permutation procedure is an extensively used issue in case-control studies and software such as permory [], presto [], and plink [] is developed, the use of permutation procedure in family-based designs is not as easy as in case-control studies. therefore, more attention is required to apply […]


Accounting for multiple comparisons in a genome wide association study (GWAS)

BMC Genomics
PMCID: 3023815
PMID: 21176216
DOI: 10.1186/1471-2164-11-724

[…] with methods from each of these statistical correction strategies to identify an appropriate measure of significance in our gwas: 1) presto, an optimized permutation algorithm [] verified by permory []; 2) the sliding-window method for locally inter-correlated markers with asymptotic distribution errors corrected (slide) program, an alternative to permutation testing, developed […]

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PERMORY institution(s)
Institute of Medical Biometry and Epidemiology (IMBE), Marburg, Germany

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