PermutMatrix pipeline

PermutMatrix specifications

Information


Unique identifier OMICS_13005
Name PermutMatrix
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Subset of gene expression data
Input format TXT, XLS, EISEN’S CLUSTER (format)
Operating system Windows
Programming languages C++
Computer skills Advanced
Version 1.9.3
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Gilles Caraux <>

Publication for PermutMatrix

PermutMatrix IN pipelines

 (2)
2016
PMCID: 4742245
PMID: 26844771
DOI: 10.1371/journal.pone.0148374

[…] by the sum of rpkm values in all libraries (rpkm threshold in unigene; > 2,129 or rpkm threshold in ensembl; > 4,389) were used for heat map analysis with hierarchical clustering using permutmatrix (http://www.lirmm.fr/~caraux/permutmatrix/en/). the excel statistical function chisq.test was used to obtain the p-values for differences between rpkm values within sex. theoretical […]

2016
PMCID: 4742245
PMID: 26844771
DOI: 10.1371/journal.pone.0148374

[…] (rpkm threshold in unigene; > 2,129 or rpkm threshold in ensembl; > 4,389) were used for heat map analysis with hierarchical clustering using permutmatrix (http://www.lirmm.fr/~caraux/permutmatrix/en/). the excel statistical function chisq.test was used to obtain the p-values for differences between rpkm values within sex. theoretical values were obtained from means of rpkm values […]

PermutMatrix institution(s)
Laboratoire d’Informatique de Robotique et de Microélectronique de Montpellier, Montpellier, France; Ecole Nationale Supérieure Agronomique de Montpellier, Montpellier, France; Research School of Biological Sciences, Australian National University, Canberra, Australia

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