PerPAS specifications


Unique identifier OMICS_19191
Name PerPAS
Alternative name Personalized Pathway Alteration analysiS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some molecular measurements and networks.
Output data A list of pathway activity scores for each sample.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.0
Stability Stable
Source code URL
Maintained Yes


No version available



  • person_outline Sampsa Hautaniemi
  • person_outline Chengyu Liu

Publication for Personalized Pathway Alteration analysiS

PerPAS institution(s)
Research Programs Unit, Genome-Scale Biology, Faculty of Medicine, University of Helsinki, Helsinki, Finland
PerPAS funding source(s)
Supported by Academy of Finland (Center of Excellence in Cancer Genetics Research), Sigrid Juselius foundation, Finnish Cancer Associations and Integrative Life Science Graduate Program (ILS).

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