Perseus specifications

Information


Unique identifier OMICS_18346
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some Proteomic pro¬files.
Output data Some average accuracy, feature ranks.
Operating system Windows
Programming languages C
Computer skills Advanced
Version 1.5.8.5
Stability Stable

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Perseus article

Perseus citations

 (4)
2017
PMCID: 5362412

[…] (18%) and membrane (8%). the raw data was then processed through the andromeda search engine of maxquant (version 1.4.1.2) software in preparation for further statistical characterization using perseus (version 1.5.0.15) software. analysis of sample replicate (sr), technical replicate (tr) and biological replicate data demonstrated excellent reproducibility throughout the entire […]

2016
PMCID: 5141267

[…] lfq analysis and were therefore not adequate for comparison to the proteomic data from the other time points. perseus v 1.5.1.6, a software package for shotgun proteomics data analysis (http://www.perseus-framework.org/), was used to calculate differential expression from the resulting lfq intensity values. differential expression values with a false-discovery-rate-adjusted p value (q value) […]

2016
PMCID: 5077297

[…] of cysteine as a fixed modification were selected as matching parameters in the search program. for quantitative evaluation, the dataset was processed using the maxquant software package, perseus and custom scripts in matlab (https://github.molgen.mpg.de/mpibr-bioinformatics/atypicalneuronglycans)., we then used a high-stringency label-free quantification (lfq) approach to identify […]

2015
PMCID: 4347857

[…] during analysis. fragmentation spectra were searched using the andromeda search engine integrated into the maxquant (v1.3.0.5) platform. computational data analysis was performed using the perseus tool (v1.3.0.4, cox j., max planck, 2012). contaminants and random protein identification were excluded. proteins that were identified by less than two peptides were excluded from the result […]

Perseus institution(s)
Computational Systems Biochemistry, Max Planck Institute of Biochemistry, Martinsried, Germany; Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA; Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany
Perseus funding source(s)
Supported by the European Union′s Horizon 2020 research and innovation programme under grant agreement no. 686547 and by the FP7 grant agreement GA ERC-2012-SyG_318987–ToPAG.

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