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chevron_left Protein-protein interaction prediction Differential protein expression Proteome analysis chevron_right
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Perseus specifications

Information


Unique identifier OMICS_18346
Name Perseus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some Proteomic pro¬files.
Output data Some average accuracy, feature ranks.
Operating system Windows
Programming languages C
Computer skills Advanced
Version 1.5.8.5
Stability Stable

Versioning


No version available

Documentation


Maintainer


This tool is not maintained anymore.

Additional information


Add info: A registration is needed to access to the issues. http://www.coxdocs.org/doku.php?id=perseus:user:tutorials http://www.coxdocs.org/doku.php?id=perseus:common:google_groups

Publications for Perseus

Perseus citations

 (842)
library_books

Relativistic dynamics and extreme mass ratio inspirals

2018
PMCID: 5954169
PMID: 29780279
DOI: 10.1007/s41114-018-0013-8

[…] sur de solides fondements; dh. 8, 1; luc. de fond en comble ( )the greek–english lexicon by liddell & scott, gives similar definitions. the short version can be consulted at the website of the perseus project., surface servant de fondement, d’où: 1 base hdt. 1, 183; part. piédestal d’une statue, hdt. 5, 85; esch. pers. 811; xén. eq. 1, 1 // 2 degré, marche, hdt. 7, 23; soph. o. c. 1591; […]

library_books

Identification of brain antigens recognized by autoantibodies in experimental autoimmune encephalomyelitis induced animals treated with etomoxir or interferon β

2018
Sci Rep
PMCID: 5935685
PMID: 29728570
DOI: 10.1038/s41598-018-25391-y

[…] acetylation (n-terminal) as variable modifications. the output contained a list of proteins identified below 1% false discovery rate, and their abundances were further filtered and processed using perseus v1.5.6.0 platform. all reverse hits that identified proteins were removed from further analysis, and the data were log2-transformed in order to approximate normal distribution. two […]

library_books

Feminizing Wolbachia influence microbiota composition in the terrestrial isopod Armadillidium vulgare

2018
Sci Rep
PMCID: 5934373
PMID: 29725059
DOI: 10.1038/s41598-018-25450-4

[…] (france)., the 16s rrna gene pyrotags were analysed using qiime version 1.9.1 and r (r project 3.3.2). briefly, the flowgrams were denoised with ampliconnoise, and chimeras were removed using perseus. all reads shorter than 250 bp were discarded and the remaining reads were clustered into operational taxonomic units (otus) at 97% similarity using uclust. representative sequences […]

library_books

Quantification of HLA DM Dependent Major Histocompatibility Complex of Class II Immunopeptidomes by the Peptide Landscape Antigenic Epitope Alignment Utility

2018
Front Immunol
PMCID: 5943503
PMID: 29774024
DOI: 10.3389/fimmu.2018.00872

[…] usa) was used for statistical analysis of quantitative western blot. variance was calculated with the two-way anova method. the null hypothesis was rejected when the p-value was lower than 0.05., perseus software () was mainly used to analyze the ms data. either peptides (peak volumes) or epitopes (% intensity from the total ion current) determined by plateau were loaded as matrices. all data […]

library_books

De novo activating mutations drive clonal evolution and enhance clonal fitness in KMT2A rearranged leukemia

2018
Nat Commun
PMCID: 5932012
PMID: 29720585
DOI: 10.1038/s41467-018-04180-1

[…] transcriptomic signatures, average log2 protein ratios and average mrna ratios (as compared to kmt2a-mllt3 + empty-gfp) were combined for matching gene symbols and 2d enrichment was performed using perseus (v1.5.5.3) with an benjamini-hochberg fdr of 0.02., for the cytokine assay, established mouse kmt2a-mllt3 + empty-gfp leukemic cells were washed once in cold pbs (ge healthcare life […]

library_books

Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behavior

2018
PMCID: 5930635
PMID: 29720263
DOI: 10.1186/s13287-018-0867-4

[…] as a variable modification. the resulting andromeda peak list-output files were further processed using maxquant software. the downstream bioinformatics data analysis was carried out using the perseus software suite (1.5.0.15) and the ingenuity pathway analysis software tool (ingenuity systems, qiagen, redwood city)., experimental values are expressed as mean ± sd. the comparison of mean […]


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Perseus institution(s)
Computational Systems Biochemistry, Max-Planck Institute of Biochemistry, Martinsried, Germany
Perseus funding source(s)
Supported by the European Union′s Horizon 2020 research and innovation program under grant agreement no. 686547 and from the FP7 grant agreement GA ERC-2012-SyG_318987-ToPAG.

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