Perseus statistics

Tool stats & trends

Looking to identify usage trends or leading experts?


Perseus specifications


Unique identifier OMICS_18346
Name Perseus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some Proteomic pro¬files.
Output data Some average accuracy, feature ranks.
Operating system Windows
Programming languages C
Computer skills Advanced
Stability Stable


No version available



This tool is not maintained anymore.

Additional information

Add info: A registration is needed to access to the issues.

Publications for Perseus

Perseus citations


Relativistic dynamics and extreme mass ratio inspirals

PMCID: 5954169
PMID: 29780279
DOI: 10.1007/s41114-018-0013-8

[…] erme sur de solides fondements; DH. 8, 1; LUC. de fond en comble ( )The Greek–English Lexicon by Liddell & Scott, gives similar definitions. The short version can be consulted at the website of the Perseus Project. surface servant de fondement, d’où: 1 base HDT. 1, 183; part. piédestal d’une statue, HDT. 5, 85; ESCH. Pers. 811; XÉN. Eq. 1, 1 // 2 degré, marche, HDT. 7, 23; SOPH. O. C. 1591; par […]


Identification of brain antigens recognized by autoantibodies in experimental autoimmune encephalomyelitis induced animals treated with etomoxir or interferon β

Sci Rep
PMCID: 5935685
PMID: 29728570
DOI: 10.1038/s41598-018-25391-y

[…] in acetylation (N-terminal) as variable modifications. The output contained a list of proteins identified below 1% false discovery rate, and their abundances were further filtered and processed using Perseus v1.5.6.0 platform. All reverse hits that identified proteins were removed from further analysis, and the data were log2-transformed in order to approximate normal distribution. Two or more uni […]


De novo activating mutations drive clonal evolution and enhance clonal fitness in KMT2A rearranged leukemia

Nat Commun
PMCID: 5932012
PMID: 29720585
DOI: 10.1038/s41467-018-04180-1

[…] d transcriptomic signatures, average log2 protein ratios and average mRNA ratios (as compared to KMT2A-MLLT3 + Empty-GFP) were combined for matching gene symbols and 2D enrichment was performed using Perseus (v1.5.5.3) with an Benjamini-Hochberg FDR of 0.02. […]


Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behavior

PMCID: 5930635
PMID: 29720263
DOI: 10.1186/s13287-018-0867-4

[…] arched as a variable modification. The resulting Andromeda peak list-output files were further processed using MaxQuant software. The downstream bioinformatics data analysis was carried out using the Perseus software suite ( and the Ingenuity Pathway Analysis software tool (Ingenuity Systems, Qiagen, Redwood City). […]


Generation and Proteome Profiling of PBMC Originated, iPSC Derived Corneal Endothelial Cells

PMCID: 5957521
DOI: 10.1167/iovs.17-22927

[…] inimum ratio count was set to two, and both unique and razor peptides were used for quantification. After protein identification and quantification were completed, the protein table was imported into Perseus software for the copy number calculation using the “proteomic ruler.”, […]


An effector from the Huanglongbing associated pathogen targets citrus proteases

Nat Commun
PMCID: 5928222
PMID: 29712915
DOI: 10.1038/s41467-018-04140-9

[…] des in all analyses is included in Supplementary Data  and raw MS data have been deposited in PRIDE ( The MaxQuant output file was imported into Perseus 1.5.015. Potential contaminants, reverse hits, and proteins identified only by modified peptides were excluded. The LFQ intensities were log2-transformed. Proteins not consistently identified […]


Looking to check out a full list of citations?

Perseus institution(s)
Computational Systems Biochemistry, Max-Planck Institute of Biochemistry, Martinsried, Germany
Perseus funding source(s)
Supported by the European Union′s Horizon 2020 research and innovation program under grant agreement no. 686547 and from the FP7 grant agreement GA ERC-2012-SyG_318987-ToPAG.

Perseus reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Perseus