PfamAlyzer specifications

Information


Unique identifier OMICS_21642
Name PfamAlyzer
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for PfamAlyzer

PfamAlyzer citations

 (2)
library_books

The automatic annotation of bacterial genomes

2012
Brief Bioinform
PMCID: 3548604
PMID: 22408191
DOI: 10.1093/bib/bbs007

[…] interpretation will be very different than if the genome were compared to C (two short ORFs annotated as two separate intact genes).Predicting domains directly, rather than genes, using tools such as PfamAlyzer [], may help in regions with split genes. In the case of eutM/eutN in Salmonella, a domain search would identify two intact domains in all cases; however, the question of whether or not tho […]

library_books

Pfam: clans, web tools and services

2005
Nucleic Acids Res
PMCID: 1347511
PMID: 16381856
DOI: 10.1093/nar/gkj149

[…] The domain query tools have undergone significant reconstruction, making them more powerful, flexible and user friendly. Domain query functionality is now offered as a web interface, in form of the PfamAlyzer Java applet and as a web service for automated searches (). The web interface allows the user to select a set of Pfam domains and arrange them in order with the possibility to define the ga […]

PfamAlyzer institution(s)
Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden; Stockholm Bioinformatics Center, Stockholms Universitet, Stockholm, Sweden

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