PFSNet specifications

Information


Unique identifier OMICS_19444
Name PFSNet
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Maintainer


This tool is not available anymore.

Publication for PFSNet

PFSNet citations

 (2)
library_books

SPSNet: subpopulation sensitive network based analysis of heterogeneous gene expression data

2018
BMC Syst Biol
PMCID: 5861489
PMID: 29560831
DOI: 10.1186/s12918-018-0538-1

[…] ysis on homogeneous phenotypes, only a few produce consistent results over independent datasets containing the same phenotypes, and none are designed to deal with potential heterogeneity in the data. PFSNet is one method among the rare exceptions which results in consistent outcomes, but it is designed to analyze only homogeneous phenotypes. We proposed SPSNet, a generalization of PFSNet, which is […]

library_books

Weighted SAMGSR: combining significance analysis of microarray gene set reduction algorithm with pathway topology based weights to select relevant genes

2016
Biol Direct
PMCID: 5041498
PMID: 27681389
DOI: 10.1186/s13062-016-0152-3

[…] orted are unimpressive. Cross-dataset error rate was ~40 %, not much better than random and hence unusable. Stability was ~14 %, also not much better than random, and would be far below those of e.g. PFSNet [], ESSNET [], or GAT [].Author’s response: Ideally, a Rand Index, a BCM, and an AUPR being closer to 1’s while a GBS and an error rate being closer to 0 represent a better segmentation between […]

PFSNet institution(s)
School of Computing, National University of Singapore, Singapore
PFSNet funding source(s)
Supported by National University of Singapore; and Singapore Ministry of Education (tier-2 grant MOE2012-T2-1-061).

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