Protocols

pfSNP specifications

Information


Unique identifier OMICS_01854
Name pfSNP
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for pfSNP

pfSNP citations

 (2)
call_split

Defects in Nicotinamide adenine Dinucleotide Phosphate Oxidase Genes NOX1 and DUOX2 in Very Early Onset Inflammatory Bowel Disease

2015
PMCID: 4539615
PMID: 26301257
DOI: 10.1016/j.jcmgh.2015.06.005
call_split See protocol

[…] npinfo/snpfunc.htm), Polyphen2 (http://genetics.bwh.harvard.edu/pph2/), SIFT (http://sift.jcvi.org/), FastSNP (http://fastsnp.ibms.sinica.edu.tw/), Human Splicing Finder (http://www.umd.be/HSF/), and pfSNP (http://pfs.nus.edu.sg/). […]

library_books

Impact of Genetic Polymorphisms of SLC2A2, SLC2A5, and KHK on Metabolic Phenotypes in Hypertensive Individuals

2013
PLoS One
PMCID: 3544854
PMID: 23341889
DOI: 10.1371/journal.pone.0052062

[…] n addition, in-silico analyses were used to assess the SNPs reported in the National Center for Biotechnology Information's dbSNP database (Build 128) , . SNPs determined to be putatively functional (pfSNP) by PupaSuite and FASTSNP were also included , . A custom genotyping array (oligo pool all, OPA) was successfully designed containing 31 SNPs: 11 SLC2A2 SNPs, 19 SLC2A5 SNPs, and 1 KHK SNP. lis […]

pfSNP institution(s)
Department of Biochemistry Yong Loo Lin School of Medicine, National University of Singapore, Singapore

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