PG Nexus specifications

Information


Unique identifier OMICS_10900
Name PG Nexus
Alternative name Proteomic-Genomic Nexus
Interface Web user interface
Restrictions to use None
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Marc Wilkins

Publication for Proteomic-Genomic Nexus

PG Nexus citation

library_books

A survey of best practices for RNA seq data analysis

2016
Genome Biol
PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] play in tandem mappings from most next-generation sequencing technologies, while adding custom tracks such as gene annotation, nucleotide variation or ENCODE datasets. For proteomics integration, the PG Nexus pipeline [] converts mass spectrometry data to mappings that are co-visualized with RNA-seq alignments. […]

PG Nexus institution(s)
Systems Biology Initiative, The University of New South Wales, Sydney, New South Wales, Australia; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia; Intersect Australia Limited, Sydney, New South Wales, Australia; Endocrine Research Laboratory (KMEB), Department of Endocrinology and Metabolism, Odense University Hospital & University of Southern Denmark, Odense, Denmark

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