PGA specifications


Unique identifier OMICS_12228
Name PGA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.10.1
Stability Stable
AnnotationDbi, BiocGenerics, IRanges, GenomicRanges, rtracklayer, BiocStyle, ggplot2, BSgenome.Hsapiens.UCSC.hg19, RUnit, S4Vectors(>=0.9.25), data.table, knitr, RSQLite, RCurl, pheatmap, stringr, R.utils, Nozzle.R1, R(>=3.0.1), Rsamtools(>=1.10.2), Biostrings(>=2.26.3), biomaRt(>=2.17.1), VariantAnnotation(>=1.7.28), rTANDEM, GenomicFeatures(>=1.19.8), customProDB(>=1.7.0)
Maintained Yes


No version available



  • person_outline Bo Wen

Publication for PGA

PGA institution(s)
BGI-Shenzhen, Shenzhen, China; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN, USA
PGA funding source(s)
This study was supported by the International Science & Technology Cooperation Program of China (2014DFB30020), Chinese National Basic Research Programs (2014CBA02002-A, 2014CBA02005) and the National High-Tech Research and Development Program of China (2012AA020202).

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