PGAT protocols

PGAT specifications


Unique identifier OMICS_08612
Alternative name Prokaryotic Genome Analysis Tool
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


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Publication for Prokaryotic Genome Analysis Tool

PGAT IN pipeline

PMCID: 5695207
PMID: 29177088
DOI: 10.1099/mgen.0.000129

[…] reads were assembled using hgap3 into a circular complete genome [12]. the genome was annotated using the national center for biotechnology information (ncbi) prokaryotic genome annotation pipeline (pgat) [13]. the genes were sorted as core or accessory genes of the species p. aeruginosa by comparing to previous pangenome analysis [14]., we compared the dhs01 genome against two datasets. dataset […]

PGAT institution(s)
Department of Microbiology, Department of Genome Sciences and Department of Immunology, University of Washington, Seattle, WA, USA
PGAT funding source(s)
National Institutes of Health, National Institute of Allergy and Infectious Diseases awards for the Northwest Regional Center for Excellence for Biodefense and Emerging Infectious Diseases Research (U54 AI057141); Enterics Research Investigational Network Cooperative Research Center (AI090882)

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