PGDSpider specifications

Unique identifier:
OMICS_17989
Interface:
Command line interface, Graphical user interface
Input format:
PGD, Arlequin, BAM, BAPS, BATWING, BCF, EIGENSOFT, XMFA, FASTA, FASTQ, FSTAT, GDA, GENELAND, GENEPOP, GENETIX, Immanc, IM, IMa2, MEGA, MIGRATE, MSA, NewHybrids, NEXUS, ONeSAMP, PED, PHYLIP, SAM, fastSTRUCTURE, VCF, CONVERT, HGDP, HGDP-CEPH, MAF
Operating system:
Unix/Linux, Mac OS, Windows
License:
BSD 3-clause “New” or “Revised” License
Version:
2.1.1.0
Requirements:
JRE
Software type:
Package/Module
Restrictions to use:
None
Output format:
BAMOVA, Bayenv, FDist2, GESTE, KML, MSVar, Strcturama, PGD, Arlequin, BAM, BAPS, BATWING, BCF, EIGENSOFT, XMFA, FASTA, FASTQ, FSTAT, GDA, GENELAND, GENEPOP, GENETIX, Immanc, IM, IMa2, MEGA, MIGRATE, MSA, NewHybrids, NEXUS, ONeSAMP, PED, PHYLIP, SAM, fastSTRUCTURE, VCF
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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PGDSpider distribution

download

PGDSpider support

Documentation

Maintainer

  • Heidi Lischer <>

Additional information

http://www.cmpg.unibe.ch/software/PGDSpider/PGDSpider%20manual_vers%202-1-1-0.pdf

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Publications

Institution(s)

Computational and Molecular Population Genetics (CMPG) laboratory, Institute of Ecology and Evolution, University of Berne, Berne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland

Funding source(s)

Supported by Swiss National Science Foundation (grant No 3100A0- 126074).

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