PGMapper statistics

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PGMapper specifications

Information


Unique identifier OMICS_18230
Name PGMapper
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Publication for PGMapper

PGMapper in publications

 (6)
PMCID: 4970213
PMID: 27480124
DOI: 10.1186/s12865-016-0163-y

[…] correlation exists but not as strong. any r value between 0 and 0.5 or 0 and -0.5 is treated as none-to-weak-correlation [, ]. initial analysis of relevance of genes to arthritis was conducted using pgmapper []., the congenic strain balb.d1-1 contains a genomic fragment flanked by markers d1mit55 and d1mit209 from dba/1 in balb/c background []. we first examined the similarities of whole genome […]

PMCID: 4123512
PMID: 25133246
DOI: 10.1155/2014/584910

[…] in case of multiple probes of a gene, the probe with the highest expression level was chosen to represent the gene. identification of bone relevant genes was conducted with a searching tool, pgmapper (http://www.genediscovery.org/pgmapper/index.jsp) with key word “bone.” for any potential candidates, at least the abstract of one reference was read by two authors to determine a link […]

PMCID: 3885592
PMID: 24416236
DOI: 10.1371/journal.pone.0084485

[…] qtl of significant loci for potential associated genes., using following searching terms—bmd, abnormal bone mineralization, bone mineral density—we identified potential candidate genes for qtl with pgmapper (http://www.genediscovery.org/pgmapper/index.jsp). mouse strain-specific single nucleotide polymorphism (snp) information of potential candidate genes was obtained using ncbi […]

PMCID: 3695999
PMID: 23840826
DOI: 10.1371/journal.pone.0068158

[…] the data represent mean percent recovery of six levels of spiked standards in serum matrices., evaluation of genes within the qtl region of chromosome 1 was conducted using a searching tool, pgmapper (http://www.genediscovery.org/pgmapper/index.jsp) . the procedures used were to that previous published . briefly, query terms were the combination of the name of the gene […]

PMCID: 3409056
DOI: 10.1186/1471-2105-13-S12-A7

[…] absorptiometer (dxa) system. qtl mapping was carried out using simple and composite interval mapping in genenetwork (http://www.genenetwork.org). candidate genes in qtl regions were ranked using pgmapper. snp genotypes of candidate genes were verified directly using pcr amplification and sequencing., our data show:, 1) a high correlation between bmd of the femur and tibia across the panel […]


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PGMapper institution(s)
Department of Orthopedic Surgery-Campbell Clinic, University of Tennessee Health Science Center, Memphis, TN, USA; Department of Computer Science and Technology, Southwest University, Chongqing, China
PGMapper funding source(s)
Supported by the Center of Excellence for Genomics and Bioinformatics at the University of Tennessee Health Science Center and by the NIH, National Institute of Arthritis and Musculoskeletal and Skin Diseases, AR51190.

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