PGMapper statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PGMapper
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Tool usage distribution map

This map represents all the scientific publications referring to PGMapper per scientific context
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Associated diseases

This word cloud represents PGMapper usage per disease context
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Protocols

PGMapper specifications

Information


Unique identifier OMICS_18230
Name PGMapper
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Publication for PGMapper

PGMapper citations

 (6)
call_split

Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL 1RA

2016
BMC Immunol
PMCID: 4970213
PMID: 27480124
DOI: 10.1186/s12865-016-0163-y
call_split See protocol

[…] correlation exists but not as strong. Any R value between 0 and 0.5 or 0 and -0.5 is treated as none-to-weak-correlation [, ]. Initial analysis of relevance of genes to arthritis was conducted using PGMapper []. […]

call_split

Sex Difference of Egfr Expression and Molecular Pathway in the Liver: Impact on Drug Design and Cancer Treatments?

2016
PMCID: 4829553
PMID: 27076848
DOI: 10.7150/jca.13684
call_split See protocol

[…] he chromosome region under the peak region of eQTL, we searched the literature report to see whether any of these genes have been reported to regulate or functionally associate with Egfr. We used the PGMapper to conduct such a search . It is a software tool for automatically matching defined functional terms to genes from a defined genome region by combining the mapping information from the Ensemb […]

library_books

Differences between Mice and Humans in Regulation and the Molecular Network of Collagen, Type III, Alpha 1 at the Gene Expression Level: Obstacles that Translational Research Must Overcome

2015
Int J Mol Sci
PMCID: 4519886
PMID: 26151842
DOI: 10.3390/ijms160715031

[…] ) of Col3a1 showed a weak positive correlation with Zc3h14. One probe (#1427884) is negatively correlated to Cpsf2.We next searched the publications that match these candidate genes with Col3a1 using PGMapper []. Our search indicated that none of these genes has been linked to Col3a1 in the literature. […]

call_split

Genome Wide Analysis of Sex Difference in Gene Expression Profiles of Bone Formations Using sfx Mice and BXD RI Strains

2014
Sci World J
PMCID: 4123512
PMID: 25133246
DOI: 10.1155/2014/584910
call_split See protocol

[…] main.py. In case of multiple probes of a gene, the probe with the highest expression level was chosen to represent the gene. Identification of bone relevant genes was conducted with a searching tool, PGMapper (http://www.genediscovery.org/pgmapper/index.jsp) with Key word “bone.” For any potential candidates, at least the abstract of one reference was read by two authors to determine a link betwee […]

call_split

Trps1 Differentially Modulates the Bone Mineral Density between Male and Female Mice and Its Polymorphism Associates with BMD Differently between Women and Men

2014
PLoS One
PMCID: 3885592
PMID: 24416236
DOI: 10.1371/journal.pone.0084485
call_split See protocol

[…] Using following searching terms—BMD, abnormal bone mineralization, bone mineral density—we identified potential candidate genes for QTL with PGMapper (http://www.genediscovery.org/pgmapper/index.jsp). Mouse strain-specific single nucleotide polymorphism (SNP) information of potential candidate genes was obtained using NCBI (http://www.ncbi […]

call_split

Congenic Mice Provide Evidence for a Genetic Locus That Modulates Spontaneous Arthritis Caused by Deficiency of IL 1RA

2013
PLoS One
PMCID: 3695999
PMID: 23840826
DOI: 10.1371/journal.pone.0068158
call_split See protocol

[…] Evaluation of genes within the QTL region of chromosome 1 was conducted using a searching tool, PGMapper (http://www.genediscovery.org/pgmapper/index.jsp) . The procedures used were to that previous published . Briefly, query terms were the combination of the name of the gene with any of these k […]


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PGMapper institution(s)
Department of Orthopedic Surgery-Campbell Clinic, University of Tennessee Health Science Center, Memphis, TN, USA; Department of Computer Science and Technology, Southwest University, Chongqing, China
PGMapper funding source(s)
Supported by the Center of Excellence for Genomics and Bioinformatics at the University of Tennessee Health Science Center and by the NIH, National Institute of Arthritis and Musculoskeletal and Skin Diseases, AR51190.

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