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PGSB PlantsDB specifications

Information


Unique identifier OMICS_03234
Name PGSB PlantsDB
Alternative names Plant Genome and Systems Biology PlantsDB, MIPS PlantesDB
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Manuel Spannagl

Publications for Plant Genome and Systems Biology PlantsDB

PGSB PlantsDB citations

 (3)
library_books

Massive expansion and differential evolution of small heat shock proteins with wheat (Triticum aestivum L.) polyploidization

2017
Sci Rep
PMCID: 5451465
PMID: 28566710
DOI: 10.1038/s41598-017-01857-3

[…] rg/pub/plants/release-26/fasta/triticum_aestivum/dna/). The genomes and gene predictions of the wheat diploid and tetraploid relatives, Brachypodium distachyon and Hordeum vulgare, were obtained from PGSB PlantsDB (ftp://ftpmips.helmholtz-muenchen.de/plants/), . First, the keywords “alpha crystallin protein” and “small heat shock protein” were searched against each genome annotation to predict can […]

library_books

Natural haplotypes of FLM non coding sequences fine tune flowering time in ambient spring temperatures in Arabidopsis

2017
eLife
PMCID: 5388537
PMID: 28294941
DOI: 10.7554/eLife.22114.033

[…] ubv10027327m), Gossypium raimondii (V2.1), Medicago truncatula (V4.0), Oryza sativa (MSU7), Populus trichocarpa (V3.0) and Solanum lycopersicum (ITAG2.3). Data sets were downloaded from Phytozome (), PGSB PlantsDB () and Ensembl Plants (). Cluster(s) containing FLM were extracted and, in case of the presence of multiple group members from individual species, filtered further using the best bi-dire […]

library_books

Improvement of barley genome annotations by deciphering the Haruna Nijo genome

2015
PMCID: 4755524
PMID: 26622062
DOI: 10.1093/dnares/dsv033

[…] projects,, 5,006 FLcDNAs were retrieved from NCBI and 23,614 FLcDNAs were downloaded from the bex-db (http://barleyflc.dna.affrc.go.jp/bexdb/). Morex genome assembly (contigs) was retrieved from the PGSB PlantsDB database (http://pgsb.helmholtz-muenchen.de/plant/plantsdb.jsp, 7 November 2015, date accessed). FLcDNAs were mapped both on the Haruna Nijo scaffolds and on the Morex contigs using blas […]

Citations

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PGSB PlantsDB institution(s)
MIPS, Institute for Bioinformatics, GSF Research Center for Environment and Health, Neuherberg Germany
PGSB PlantsDB funding source(s)
European Commission (framework 6 programme) within the Grain Legumes Integrated Project (GLIP) and EU-SOL project as well as within the framework 7 programme in the TriticeaeGenome project and transPLANT project (European Commission within its 7th Framework Programme under the thematic area ‘Infrastructures’, contract number 283496); German Ministry for Education and Research (BMBF) within the GABI and Plant for the future projects TRITEX and BARLEX

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