pgWalk statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

pgWalk specifications

Information


Unique identifier OMICS_07797
Name pgWalk
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


No version available

Maintainer


  • person_outline Rui Jiang

Information


Unique identifier OMICS_07797
Name pgWalk
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Rui Jiang

pgWalk citations

 (3)
library_books

Heterogeneous network propagation for herb target identification

2018
BMC Med Inform Decis Mak
PMCID: 5872392
PMID: 29589568
DOI: 10.1186/s12911-018-0592-z

[…] e other hand, plenty of prediction approaches based on network propagation have been widely applied to identify genetic associations, e.g., drugCIPHER-MS [] for drug target identification, PRINCE [], pgWalk [] and Know-GENE [] for disease gene identification and herb target prediction, which indicated that network propagation is an effective approach to figure out the problem of link prediction in […]

library_books

Gene gravity like algorithm for disease gene prediction based on phenotype specific network

2017
BMC Syst Biol
PMCID: 5718078
PMID: 29212543
DOI: 10.1186/s12918-017-0519-9

[…] type of application provides alternatives for phenotypes with few known disease genes, but fails to fully exploit the similarity information. The second class of methods, such as Cipher [], RWRH [], pgWalk [] and MAXIF [], combines phenotype-phenotype similarities, gene-phenotype relations and gene-gene interactions to construct a heterogeneous network. Based on the heterogeneous network, new gen […]

library_books

Mimvec: a deep learning approach for analyzing the human phenome

2017
BMC Syst Biol
PMCID: 5615244
PMID: 28950906
DOI: 10.1186/s12918-017-0451-z

[…] nctional similarities across different genomic data sources []. This assumption has become the basis for designing gene prioritization methods, with such successful stories as PRINCE [], pgFusion [], pgWalk [] and many others []. With our method to characterize phenotype similarity based on vector representations of phenotypes with the use of the cosine measure or the alike, we explore whether the […]

Citations

Looking to check out a full list of citations?

pgWalk institution(s)
MOE Key Laboratory of Bioinformatics, Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST; Department of Automation, Tsinghua University, Beijing, China

pgWalk reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review pgWalk