PGx specifications

Information


Unique identifier OMICS_10899
Name PGx
Interface Web user interface
Restrictions to use None
Input data PGx relies solely on three standard files that succinctly summarize the contribution of the three main arms of the proteogenomics effort: a BED file integrating the results of DNA and RNA sequencing, a FASTA file representing the complete predicted proteome and a peptide list representing the results of peptide sequencing.
Programming languages Python
License MIT License
Computer skills Basic
Stability Stable
Maintained Yes

Information


Unique identifier OMICS_10899
Name PGx
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data PGx relies solely on three standard files that succinctly summarize the contribution of the three main arms of the proteogenomics effort: a BED file integrating the results of DNA and RNA sequencing, a FASTA file representing the complete predicted proteome and a peptide list representing the results of peptide sequencing.
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for PGx

library_books

PGx: Putting Peptides to BED.

2016 J Proteome Res
PMCID: 4782174
PMID: 26638927
DOI: 10.1021/acs.jproteome.5b00870
PGx institution(s)
Biomedical Hosting LLC, Arlington, MA, USA; NYU Langone Medical Center, New York, NY, USA; NYU Langone Medical Center, New York, NY, USA
PGx funding source(s)
This work was supported by funding provided by the National Institutes of Health through grant CA160035 and contract S13-068 from Leidos.

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