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Ph-CNN specifications

Information


Unique identifier OMICS_27965
Name Ph-CNN
Alternative name Phylogenetic Convolutional Neural Network
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Giuseppe Jurman <>

Publication for Phylogenetic Convolutional Neural Network

Ph-CNN in publication

PMCID: 5850953
PMID: 29536822
DOI: 10.1186/s12859-018-2033-5

[…] neural networks can be effectively used only when data are endowed with an intrinsic concept of neighbourhood in the input space, as is the case of pixels in images. we introduce here ph-cnn, a novel deep learning architecture for the classification of metagenomics data based on the convolutional neural networks, with the patristic distance defined on the phylogenetic tree […]


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Ph-CNN institution(s)
Fondazione Bruno Kessler (FBK), Trento, Italy; Max Planck Institute for Intelligent Systems, Tübingen, Germany; Centre for Medical Informatics, Usher Institute, University of Edinburgh, Edinburgh, UK; Department of Mathematics, University of Trento, Trento, Italy
Ph-CNN funding source(s)
Supported by the FBK CI003 institutional funds.

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