Phage Classification Tool Set pipeline

Phage Classification Tool Set specifications

Information


Unique identifier OMICS_17801
Name Phage Classification Tool Set
Interface Web user interface
Restrictions to use None
Input data Proteins of your single phage to be classified. Files must contain amino acids.
Input format FASTA
Programming languages Perl
Computer skills Basic
Stability Stable
Source code URL http://www.phantome.org/PHACTS/PHACTS-0.3.tar.gz
Maintained Yes

Maintainer


  • person_outline Katelyn McNair <>

Publication for Phage Classification Tool Set

Phage Classification Tool Set IN pipeline

2014
PMCID: 4236739
PMID: 25406510
DOI: 10.1038/srep07118

[…] analysis25. the beginning and end of a specific prophage genome were estimated based on the annotations of surrounding genes. the complete prophage genome was used to predict lifestyle with the phage classification tool set (phacts) (http://www.phantome.org/phacts/)11., a trna search was performed in the prophage genome using trnascan-se (http://lowelab.ucsc.edu/trnascan-se)12. homologous […]

Phage Classification Tool Set institution(s)
Computational Science Research Center, San Diego State University, San Diego, CA, USA; Department of Mathematics and Statistics, San Diego State University, San Diego, CA, USA; Department of Computer Science, San Diego State University, San Diego, CA, USA; Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA

Phage Classification Tool Set reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Phage Classification Tool Set