PhageTerm specifications


Unique identifier OMICS_16275
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data The sequencing reads, the corresponding assembled phage genome.
Input format FASTQ, FASTA
Output data The mapped reads, the starting position coverage (SPC), the coverage (COV) in each orientation.
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.7
Stability Stable
Requirements Matplotlib, numpy, pandas, sklearn, scipy, statsmodels, reportlab
Maintained Yes



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  • person_outline Marc Monot <>

PhageTerm article

PhageTerm funding source(s)
This work was supported by a discovery grant from the Natural Sciences and Engineering Research Council of Canada (NSERC #341450-2010), the Agence Nationale de la Recherche (“CloSTARn”, ANR-13-JSV3-0005-01) and the french Government's Investissement d'Avenir program; Laboratoire d'Excellence ‘Integrative Biology of Emerging Infectious Diseases’ (ANR-10-LABX-62-IBEID).

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