Phangorn specifications

Information


Unique identifier OMICS_12497
Name Phangorn
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0.4
Stability Stable
Requirements R, ape
Maintained Yes

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Maintainer


  • person_outline Klaus Peter Schliep <>

Phangorn article

Phangorn citations

 (2)
2016
PMCID: 5381562

[…] and ochoterena 2000). we inferred the number of microstructural changes along branches by parsimony scoring via custom scripts in combination with the r-packages “ape” (paradis et al. 2004) and “phangorn” (schliep 2011) as described in jansen et al. (2007) and modifications regarding the subsequent statistical test as detailed in wicke et al. (2016). di-, tri- and tetramer single sequence […]

2016
PMCID: 5221586

[…] hon software foundation, www.python.org/psf/; cock et al., 2009). the resulting hits were collected in a single file, and a cluster analysis was performed in the r software suite with the help of the phangorn package (r development core team, 2008; schliep, 2011). the distance matrix for the cluster analysis was calculated using the johns–tyler–thornton model of amino acid evolution (jones et al., […]

Phangorn institution(s)
UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Muséum National d'Histoire Naturelle, Paris, France
Phangorn funding source(s)
Muséum National D'Histoire Naturelle, Paris, France

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