phantompeakqualtools specifications

Information


Unique identifier OMICS_00431
Name phantompeakqualtools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM, BED
Output format BED
Operating system Unix/Linux
Programming languages R
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

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phantompeakqualtools review

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Fabien Pichon

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Desktop
Indispensable for ChIP-seq and ATAC-seq quality control. Produces a graph showing the crosscorrelation of reads distributions on forward and reverse strand as well as ratios to estimate the noise. Be carefull however, because these ratios are meaningfull only for narrow peaks, not for broad peaks like H3K27me3 or H3K36me3.