phantompeakqualtools specifications

Unique identifier:
OMICS_00431
Interface:
Command line interface
Input format:
BAM, BED
Operating system:
Unix/Linux
License:
MIT License
Version:
1.1
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Output format:
BED
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

phantompeakqualtools distribution

download

phantompeakqualtools support

Documentation

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
Fabien Pichon's avatar image Fabien Pichon's country flag

Fabien Pichon

star_border star_border star_border star_border star_border
star star star star star

Indispensable for ChIP-seq and ATAC-seq quality control. Produces a graph showing the crosscorrelation of reads distributions on forward and reverse strand as well as ratios to estimate the noise. Be carefull however, because these ratios are meaningfull only for narrow peaks, not for broad peaks like H3K27me3 or H3K36me3.

Related Tools