PharmaGist statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Protein-ligand docking chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PharmaGist specifications

Information


Unique identifier OMICS_23988
Name PharmaGist
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data A molecule.
Input format MOL2
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Dina Schneidman-Duhovny <>

Information


Unique identifier OMICS_23988
Name PharmaGist
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Dina Schneidman-Duhovny <>

Publications for PharmaGist

PharmaGist in publications

 (7)
PMCID: 5320927
PMID: 28293073
DOI: 10.6026/97320630012311

[…] the free chemo-informatics toolkit frowns []., the common pharmacophores for the hit molecules and nine active molecules (used as reference) obtained from bioassay (aid: 256664) were predicted using pharmagist server [-]. finally the hit molecules were annotated to check their cytotoxic effect on tumor and normal cell-lines by using clc-pred [] web services, which predicts cytotoxicity […]

PMCID: 4676138
PMID: 26692904
DOI: 10.1186/s13321-015-0108-0

[…] are available through the chemaxon cheminformatics platform [] which also allows for similarity searches. pharmacophore models could be derived and used for database searching using pharmer [, ] and pharmagist [, ]. additional similarity searches based on fingerprints, 2d pharmacophoric fingerprints and the tanimoto coefficient could be performed with rdkit [] or with the cdk toolkit []. […]

PMCID: 4682379
PMID: 26680552
DOI: 10.1186/1755-8794-8-S4-S4

[…] it often needs at least one month to build the correct model. we show the user interface for detailed parameter setting for your reference. please refer to additional file : figure s5.5., b. pharmagist, pharmagist is another method to construct ligand-based pharmacophores. because it does not require ic50 values of ligands [], it is easier to construct pharmacophores by pharmagist […]

PMCID: 4641463
PMID: 26583052
DOI: 10.1002/minf.201400162

[…] reynolds et al.[] benchmarked the performance of inddex at retrieving molecules on the directory of useful decoys (dud)[] and found inddex outperformed other the screening methods ehits lasso,[] pharmagist[] and dock:[] training on eight ligands, inddex achieved mean enrichment factors of 90.4 and 707 on 1 % and 0.1 % of the database respectively, and an enrichment factor of 66.9 on 1 % […]

PMCID: 4106188
PMID: 25081126
DOI: 10.7717/peerj.476

[…] of ligand by the target molecule, we generated the pharmacophore features for the 19 molecules identified to be active against non-replicating drug tolerant mycobacterium tuberculosis using pharmagist software (). pharmagist computes the pharmacophore model by doing multiple flexible alignments of the input molecules. we have reported the three highest-scoring pharmacophores […]


To access a full list of publications, you will need to upgrade to our premium service.

PharmaGist institution(s)
School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel; Sackler Institute of Molecular Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Basic Research Program, SAIC-Frederick, Center for Cancer Research, Nanobiology Program, NCI-Frederick, Frederick, MD, USA
PharmaGist funding source(s)
Supported by Federal funds from the National Cancer Institute, National Institutes of Health, under contract number N01-CO-12400.

PharmaGist reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PharmaGist