Pharmspresso statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Pharmspresso

Tool usage distribution map

This map represents all the scientific publications referring to Pharmspresso per scientific context
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Pharmspresso specifications


Unique identifier OMICS_25210
Name Pharmspresso
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No


This tool is not available anymore.

Publication for Pharmspresso

Pharmspresso citations


A corpus for plant chemical relationships in the biomedical domain

BMC Bioinformatics
PMCID: 5029005
PMID: 27650402
DOI: 10.1186/s12859-016-1249-5

[…] hin a sentence and across sentence boundaries. Along with [, ], there are several chemical- or drug-related corpora such as Comparative Toxicogenomics Database corpus [] and a corpus contained in the Pharmspresso database []. However, there are so far no publicly available corpora for plant–chemical relationships.Jensen et al. [] proposed an integrated text mining approach and chemoinformatics ana […]


Using Nanoinformatics Methods for Automatically Identifying Relevant Nanotoxicology Entities from the Literature

Biomed Res Int
PMCID: 3591181
PMID: 23509721
DOI: 10.1155/2013/410294

[…] topic in biomedical informatics research, since many different systems for automatically indexing and searching the biomedical literature have been developed over the last few years. Examples include Pharmspresso [], an information retrieval and extraction system for pharmacogenomic-related literature that follows a dictionary-based approach to identify instances of genes, drugs, polymorphisms and […]


Using ODIN for a PharmGKB revalidation experiment

PMCID: 3332569
PMID: 22529178
DOI: 10.1093/database/bas021

[…] presso is another well-known text-mining system that is characterized by the usage of ontological categories of biological concepts (,), as well as by processing full papers. A variant of Textpresso (Pharmspresso) has been used for automatic annotation of pharmacogenomic literature for PharmGKB, but was never integrated with the manual curation process (). […]


Discovering drug–drug interactions: a text mining and reasoning approach based on properties of drug metabolism

PMCID: 2935409
PMID: 20823320
DOI: 10.1093/bioinformatics/btq382

[…] oning techniques to find DDIs from Medline abstracts. We demonstrated that our extraction approach has the distinct capability of performing generic extraction. Unlike EDGAR (Rindflesch et al., ) and Pharmspresso (Garten and Altman, ) that are capable of extracting a variety of drug-gene relationships, our approach utilizes a variety of extracted drug-gene and protein–protein interactions to infer […]

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Pharmspresso institution(s)
Biomedical Informatics Training Program, Stanford University, Stanford, CA, USA; Departments of Bioengineering and Genetics, Stanford University, Stanford, CA, USA
Pharmspresso funding source(s)
Supported by training grant NIH LM007033 from the National Library Medicine, NIH/NIGMS Pharmacogenetics Research Network and Database and the PharmGKB resource (NIH GM61374).

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