Pharos statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Pharos
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Tool usage distribution map

This map represents all the scientific publications referring to Pharos per scientific context
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Pharos specifications

Information


Unique identifier OMICS_14026
Name Pharos
Interface Web user interface
Restrictions to use None
Database management system MySQL
License Other
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Rajarshi Guha

Information


Unique identifier OMICS_14026
Name Pharos
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Database management system MySQL
License MIT License
Computer skills Medium
Stability Stable
Requirements
JDK
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Rajarshi Guha

Publication for Pharos

Pharos citations

 (4)
library_books

Drug Repositioning in Glioblastoma: A Pathway Perspective

2018
Front Pharmacol
PMCID: 5864870
PMID: 29615902
DOI: 10.3389/fphar.2018.00218

[…] able Genome (IDG) project (https://commonfund.nih.gov/idg/). A specific priority for IDG is to identify understudied disease relevant targets. All IDG data and a query interface are available via the Pharos Data Portal (Nguyen et al., ).Although these databases are important resources for identifying single repurposed compounds in GBM, it is likely essential to identify combinations of drugs for t […]

library_books

The ChEMBL database in 2017

2016
Nucleic Acids Res
PMCID: 5210557
PMID: 27899562
DOI: 10.1093/nar/gkw1074

[…] ion). ChEMBL data is incorporated into a wide range of other resources including PubChem BioAssay (), BindingDB (), CanSAR (), Open PHACTS (), Open Targets () and the Target Central Resource Database/PHAROS (http://juniper.health.unm.edu/tcrd/, ), so can also be accessed via these routes. However, since these other resources are different in scope, they do not all incorporate ChEMBL in full (e.g. […]

library_books

Discovery of a Family of Genomic Sequences Which Interact Specifically with the c MYC Promoter to Regulate c MYC Expression

2016
PLoS One
PMCID: 4995011
PMID: 27551915
DOI: 10.1371/journal.pone.0161588

[…] equal volume of 2x glycerol dye was added and run on a 15% native acrylamide gel at 250V for 3h. Bands were visualized by exposing a Kodak phosphor-imager screen and scanned using a Molecular Imager (Pharos FX Plus, Bio-Rad) then to Kodak film for 12h at -80°C. […]

library_books

Instability of CTG Repeats is Governed by the Position of a DNA Base Lesion through Base Excision Repair

2013
PLoS One
PMCID: 3582642
PMID: 23468897
DOI: 10.1371/journal.pone.0056960

[…] ase K digestion at 55°C for 30 min. Reaction mixtures were subjected to 95°C for 10 min to denature DNA. Substrates and digestion products were separated by 15% urea-denaturing PAGE and detected by a Pharos FX Plus PhosphorImager from Bio-Rad. Synthesized DNA size markers were used to indicate the size of nuclease cleavage products. […]


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Pharos institution(s)
National Center for Advancing Translational Science, Chinakville, MD, USA; Mount Sinai Center for Bioinformatics, Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA; Translational Informatics Division, School of Medicine, University of New Mexico, Albuquerque, NM, USA; Center for Molecular Discovery, University of New Mexico Cancer Center, University of New Mexico, Albuquerque, NM, USA; Center for Computational Science, University of Miami, Coral Gables, FL, USA; Department of Applied Chemistry, Delhi Technological University, Delhi, India; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL, USA; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, UK; East China University of Science and Technology, Department Pharmaceutical Sciences, Shanghai, China; BA/MD Program, School of Medicine, University of New Mexico, Albuquerque, NM, USA; BenevolentAI, London, UK
Pharos funding source(s)
This work was supported by the National Institutes of Health (NIH) Common Fund (CA189205, CA189201), the Novo Nordisk Foundation (NNF14CC0001) and the Intramural Research Program, NCATS.

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