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PhaseTank specifications


Unique identifier OMICS_09375
Name PhaseTank
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes


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  • person_outline Weibo Jin <>

Publication for PhaseTank

PhaseTank citations


Genome wide identification and characterization of phased small interfering RNA genes in response to Botrytis cinerea infection in Solanum lycopersicum

PMCID: 5465084
PMID: 28596514
DOI: 10.1038/s41598-017-02233-x

[…] identified loci, 51 were located in genic regions, and the remaining 40 were located in intergenic regions. the transient overexpression of phas15 and phas26 demonstrated that phasirnas predicted by phasetank were indeed generated from their respective phas loci. using srna-seq data from b. cinerea-infected tomato leaves, we identified 50 b. cinerea-responsive phasirnas with increased abundance […]


Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

PMCID: 5295217
PMID: 28166742
DOI: 10.1186/s12864-017-3526-8

[…] rice; down: down-regulated in autotetraploid rice; pma, ma, scp and bcp represent pre-meiotic interphase, meiosis and single microspore stage and bi-cellular pollen stage, respectively, based on phasetank analysis [], we observed 1117 loci generating 21 nt-phasirnas and 190 loci generating 24 nt-phasirnas triggered by the mir2118 and mir2275, respectively (additional file : tables s18, s19). […]

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PhaseTank institution(s)
College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou, Zhejiang, China; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China; School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China
PhaseTank funding source(s)
This work was supported by the grants from Natural Science Foundation of China [No. 31372075 and No. 31000913]; and the Zhejiang Provincial Top Key Discipline of Biology.

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