phd2fasta specifications

Information


Unique identifier OMICS_31983
Name phd2fasta
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data PHD
Output data FASTA
Operating system Unix/Linux
Programming languages C
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.990622.f
Stability No
Maintained Yes

Versioning


No version available

phd2fasta citation

library_books

Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers

2010
BMC Genet
PMCID: 2920227
PMID: 20626882
DOI: 10.1186/1471-2156-11-66

[…] Among the vector sequences, low quality and redundant sequences were rejected with Chromas, Phred [] and phd2fasta. Sequences longer than 100 bp were outputted after converting to FASTA forms. Uniform sequences were assembled using CAP3 [] software for splicing into contigs with two or more ESTs. […]

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