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phd2fasta specifications


Unique identifier OMICS_31983
Name phd2fasta
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data PHD
Output data FASTA
Operating system Unix/Linux
Programming languages C
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.990622.f
Stability No
Maintained Yes


No version available

phd2fasta citation


Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers

BMC Genet
PMCID: 2920227
PMID: 20626882
DOI: 10.1186/1471-2156-11-66

[…] Among the vector sequences, low quality and redundant sequences were rejected with Chromas, Phred [] and phd2fasta. Sequences longer than 100 bp were outputted after converting to FASTA forms. Uniform sequences were assembled using CAP3 [] software for splicing into contigs with two or more ESTs. […]

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