PHDcleav specifications


Unique identifier OMICS_13843
Name PHDcleav
Interface Web user interface
Restrictions to use None
Input data One or more pre-miRNA sequences
Computer skills Basic
Stability Stable
Maintained Yes


Publication for PHDcleav

PHDcleav in publications

PMCID: 4006729
PMID: 24786770
DOI: 10.1371/journal.pgen.1004312

[…] mature mirnas are generated from exon 5 in cells, we predicted mirna sequences based on the identified drosha cleavage sites and extrapolation of dicer cleavage sites using the prediction algorithm, phdcleav (). we designed stem-loop primers for reverse transcription that were specific for all predicted mature mirna 3′ ends and the 3′ ends detected by 3′race (), and determined the actual […]

PMCID: 3851158
PMID: 24267415
DOI: 10.1186/1471-2105-14-S14-S1

[…] cleavage sites []. the method, which can make use of structural information, was trained and tested on experimentally-validated mirnas from mirbase and found to have over 86% accuracy. a web server, phdcleav, is available to allow users to predict dicer cleavage sites in pre-mirna., jie shen et al described three-dimensional modeling of the rat α-fetoprotein, a plasma protein that can sequester […]

To access a full list of publications, you will need to upgrade to our premium service.

PHDcleav institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India; National Institute for Microbial Forensics & Food and Agricultural Biosecurity (NIMFFAB), Department of Biochemistry & Molecular Biology, Oklahoma State University, Stillwater, OK, USA; Bioinformatics Laboratory, Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, USA
PHDcleav funding source(s)
This work was funded by CSIR grant (advanced centre for protein informatics, science and technology).

PHDcleav reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PHDcleav