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Protocols

Phenol-Explorer specifications

Information


Unique identifier OMICS_06724
Name Phenol-Explorer
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Version 3.6
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Phenol-Explorer

Maintainer


  • person_outline Augustin Scalbert

Publications for Phenol-Explorer

Phenol-Explorer citations

 (4)
library_books

A computationally driven analysis of the polyphenol protein interactome

2018
Sci Rep
PMCID: 5797150
PMID: 29396566
DOI: 10.1038/s41598-018-20625-5

[…] al data on polyphenol-protein complexes deposited in the Protein Data Bank (PDB) is <100. Protein interactions with curcumin, also a known polyphenol in the class of ‘Other polyphenols’ (according to Phenol-Explorer), were below STITCH’s evidence score of 0.9, and thus were not selected. Most polyphenol-interacting proteins (95%) interact with <5 polyphenols. A few proteins (12) were found to inte […]

library_books

In silico approach for the discovery of new PPARγ modulators among plant derived polyphenols

2015
Drug Des Devel Ther
PMCID: 4639521
PMID: 26604687
DOI: 10.2147/DDDT.S93449

[…] igand compounds predicts the best interaction mode for a defined binding site., In the current study, hPPARγ was docked with two sets of compounds: the first contained 924 molecules registered in the Phenol Explorer database as phenolic compounds, and the second set includes 10,437 compounds with structural similarity to scutellarin (http://goo.gl/1O3O07), of which 1,085 comply with Lipinski’s Rul […]

call_split

Systematic analysis of the polyphenol metabolome using the Phenol‐Explorer database

2015
PMCID: 5057353
PMID: 26310602
DOI: 10.1002/mnfr.201500435
call_split See protocol

[…] Phenol‐Explorer tables on metabolites detected, metabolite concentrations, plasma pharmacokinetics, and urine pharmacokinetics were exported and data analyzed using Microsoft Excel and R statistical s […]

library_books

New Biomarkers of Coffee Consumption Identified by the Non Targeted Metabolomic Profiling of Cohort Study Subjects

2014
PLoS One
PMCID: 3979684
PMID: 24713823
DOI: 10.1371/journal.pone.0093474

[…] ps.edu) were queried to hypothesize identities. In addition, a customized in-house database on coffee phytochemical metabolites was used, comprising all phytochemicals reported in coffee according to Phenol-Explorer (http://www.phenol-explorer.eu), Duke's Phytochemical and Ethnobotanical Database (http://www.ars-grin.gov/duke), the Dictionary of Natural Products, KNApSAcK and a literature survey, […]

Citations

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Phenol-Explorer institution(s)
International Agency for Research on Cancer (IARC), Nutrition and Metabolism Section, Biomarkers Group, Lyon, France; INRA, UMR1019, Unité Nutrition Humaine, CRNH Auvergne, Clermont-Ferrand, France; Department of Biological Chemistry, Institute of Advanced Chemistry of Catalonia (IQAC-CSIC), Barcelona, Spain; Nutrition and Food Science Department, School of Pharmacy, Diagonal Campus, University of Barcelona, Barcelona, Spain; CIBER: BC06/03 Fisiopatologia de la Obesidad y la Nutrición, CIBERobn Instituto de Salud Carlos III, Madrid, Spain; In Siliflo Inc, Edmonton, AB, Canada; Departments of Computing Science and Biological Sciences, University of Alberta, Edmonton, AB, Canada
Phenol-Explorer funding source(s)
Supported by Danone Research and the Institut National du Cancer, Paris (INCa 2011-105).

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