A multi-organism phenotype-genotype database including human, mouse, fruit fly, C. elegans, and other model organisms. The inclusion of gene indices (NCBI Gene) and orthologues (same gene in different organisms) from HomoloGene allows to compare phenotypes of a given gene over many organisms simultaneously. PhenomicDB contains data from publicly available primary databases: FlyBase,, WormBase, Phenobank, CYGD, MatDB, OMIM, MGI, ZFIN, SGD, DictyBase, NCBI Gene, and HomoloGene.

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PhenomicDB forum

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PhenomicDB classification

  • Animals
    • Caenorhabditis elegans
    • Danio rerio
    • Drosophila melanogaster
    • Homo sapiens
    • Mus musculus
  • Fungi
    • Saccharomyces cerevisiae
  • Protists
    • Dictyostelium discoideum

PhenomicDB specifications

Restrictions to use:
PhenomicDB version 3.9.8
Data access:
File download, Web user interface

PhenomicDB support




  • (Groth et al., 2010) Phenoclustering: online mining of cross-species phenotypes. Bioinformatics.
    PMID: 20562418
  • (Groth et al., 2007) PhenomicDB: a new cross-species genotype/phenotype resource. Nucleic acids research.
    PMID: 16982638
  • (Kahraman et al., 2005) PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics. Bioinformatics.
    PMID: 15374875


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Link to literature

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