PhenoNet specifications


Unique identifier OMICS_04211
Name PhenoNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens


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Publication for PhenoNet

PhenoNet in publications

PMCID: 5907215
PMID: 29671400
DOI: 10.1186/s12859-018-2102-9

[…] measurement. however, existing methods ignore the interactions between phenotype-associated proteins, which may lead to inaccurate phenotype similarity., we proposed a network-based method phenonet to calculate the similarity between phenotypes. we localized phenotypes in the network and calculated the similarity between phenotype-associated modules by modeling both the inter- […]

PMCID: 5847531
PMID: 29531220
DOI: 10.1038/s41467-018-03448-w

[…] the nodes, against which the realized interactions will be compared., to overcome this methodological bias, we introduce a dynamic approach to data pooling in bipartite ecological networks, the ‘phenonet’ structure, which partitions the total cumulative network into a set of networks equal in number to the interacting species in the community. here, a phenonet becomes a snapshot […]

PMCID: 5029618
PMID: 27036038
DOI: 10.18632/oncotarget.6687

[…] according to the following features: age, gender, tumor longest dimension and histological type. the figure demonstrates that the two groups display very similar clinical features., here, we applied phenonet [], to identify pathways and networks associated with different disease progression. phenonet uses two types of input data: gene expression data (rma, rpkm, fpkm, etc.) and phenotypic […]

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PhenoNet institution(s)
The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel

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