Phenopredict statistics

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Phenopredict specifications


Unique identifier OMICS_18951
Name Phenopredict
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Jeffrey Leek <>

Publication for Phenopredict

Phenopredict in publication

PMCID: 5799769
PMID: 28967908
DOI: 10.1038/onc.2017.328

[…] (1039 phenotypes). the jaccard coefficient is 0.136 (294/(1426+1039–296)) between hgsoc and ibuprofen. based on the jaccard coefficient values, drugpredict ranked indomethacin higher than ibuprofen. phenopredict built phenotype profiles for all drugs and then calculated the jaccard coefficients for each drug. the output of drugpredict is a list of drugs ranked based on the jaccard coefficients., […]

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Phenopredict institution(s)
Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, USA
Phenopredict funding source(s)
Supported by NIH R01 GM105705.

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