PhenoProphet statistics

info info

Citations per year


Tool usage distribution map

info info

Associated diseases


Popular tool citations

chevron_left Gene regulatory network inference chevron_right
Want to access the full stats & trends on this tool?

PhenoProphet specifications


Unique identifier OMICS_13788
Name PhenoProphet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 0.1
Stability Beta
Maintained Yes




No version available


  • person_outline Michael Brent

Publication for PhenoProphet

PhenoProphet citation


Networks of fibers and factors: regulation of capsule formation in Cryptococcus neoformans

PMCID: 4979528
PMID: 27516877
DOI: 10.12688/f1000research.8854.1

[…] letions of genes encoding regulators. This tool, which combines data from both co-expression and differential expression, ranks all possible TF-target interactions. They then used a second algorithm, PhenoProphet, to predict new TFs associated with capsule phenotypes (based on whether the target genes of each TF were enriched for those that influence capsule). Deletion of the genes encoding the pr […]

Want to access the full list of citations?
PhenoProphet institution(s)
Center for Genome Sciences and Systems Biology, Washington University, Saint Louis, MO, USA; Department of Computer Science and Engineering, Washington University, Saint Louis, MO, USA; Department of Genetics, Washington University School of Medicine, Saint Louis, MO, USA
PhenoProphet funding source(s)
This work was supported by the National Institutes of Health (grants n°AI087794 and HG000045) and an Alexander and Gertrude Berg fellowship.

PhenoProphet reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PhenoProphet