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PhenoProphet specifications

Information


Unique identifier OMICS_13788
Name PhenoProphet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 0.1
Stability Beta
Maintained Yes

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Maintainer


  • person_outline Michael Brent

Publication for PhenoProphet

PhenoProphet citation

library_books

Networks of fibers and factors: regulation of capsule formation in Cryptococcus neoformans

2016
F1000Res
PMCID: 4979528
PMID: 27516877
DOI: 10.12688/f1000research.8854.1

[…] letions of genes encoding regulators. This tool, which combines data from both co-expression and differential expression, ranks all possible TF-target interactions. They then used a second algorithm, PhenoProphet, to predict new TFs associated with capsule phenotypes (based on whether the target genes of each TF were enriched for those that influence capsule). Deletion of the genes encoding the pr […]


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PhenoProphet institution(s)
Center for Genome Sciences and Systems Biology, Washington University, Saint Louis, MO, USA; Department of Computer Science and Engineering, Washington University, Saint Louis, MO, USA; Department of Genetics, Washington University School of Medicine, Saint Louis, MO, USA
PhenoProphet funding source(s)
This work was supported by the National Institutes of Health (grants n°AI087794 and HG000045) and an Alexander and Gertrude Berg fellowship.

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