phenosim statistics

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Citations per year

Citations chart

Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

phenosim specifications


Unique identifier OMICS_04382
Name phenosim
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


  • Plants and Fungi
    • Arabidopsis thaliana


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Additional information

Publication for phenosim

phenosim in publications

PMCID: 5907215
PMID: 29671400
DOI: 10.1186/s12859-018-2102-9

[…] the term matching-based approach that ignores the semantic relation between terms. however, this method may be hindered by the noises in the patient phenotype data []. a pagerank-based method, named phenosim, was proposed to model the noises in the patient phenotype data set before applying the ontology-based method []. the evaluation test shows that phenosim performs better than the ic-based […]

PMCID: 2892460
PMID: 20525321
DOI: 10.1186/1752-0509-4-78

[…] with., here, we retrieved human disease genes and the associated diseases from morbid map (omim). we classified the shared disease genes into genes associated with phenotypically similar diseases (phenosim genes) and those that are associated with phenotypically divergent diseases (phenodiv genes) based on cipher score []. for instance, akt1 which is associated with ovarian cancer, breast […]

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phenosim institution(s)
Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Stuttgart, Germany

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