PHENOstruct specifications
Information
| Unique identifier | OMICS_13456 |
|---|---|
| Name | PHENOstruct |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | PHENOstruct takes the set of feature vectors and HPO annotations associated with each gene as input for training. |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Version | 0.1 |
| Stability | Stable |
| Maintained | Yes |
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Versioning
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Maintainer
- person_outline Asa Ben-Hur
Publication for PHENOstruct
library_books
PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources
2015 F1000Res
PMCID: 4722686
PMID: 26834980
DOI: 10.12688/f1000research.6670.1
PHENOstruct citation
library_books
Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
2017
BMC Bioinformatics
PMCID: 5639780
PMID: 29025394
DOI: 10.1186/s12859-017-1854-y
[…] We compared the hierarchical ensemble methods for DAGs (HTD, “” subsection) and TPR and its variants, (“” subsection) against several state-of-the-art and baseline methods: PHENOstruct, a state-of-the art joint-kernel structured support vector machine approach []. This method uses the product of the input and output space kernel to construct the joint kernel. The rationa […]
PHENOstruct institution(s)
Department of Computer Science, Colorado State University, Fort Collins, CO, USA; Computational Bioscience Program, University of Colorado School of Medicine, Aurora, CO, USA; Department of Computing and Information Systems, University of Melbourne, Parkville, VIC, Australia; Health and Biomedical Informatics Centre, University of Melbourne, Parkville, VIC, Australia
PHENOstruct funding source(s)
This work was supported by the NSF Advances in Biological Informatics program through grants number 0965768 and 0965616.
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