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Phenotype enrichment analysis software tools | Gene expression

Genome-scale phenotypic data are available for many model organisms, yet existing tools to functionally interpret gene sets from these phenotypic data are largely based on mutagenesis-derived phenotypes observed in mouse or human.Source text:(Weng…
ToppGene
Web

ToppGene

A one-stop portal for (i) gene list functional enrichment, (ii) candidate gene…

A one-stop portal for (i) gene list functional enrichment, (ii) candidate gene prioritization using either functional annotations or network analysis and (iii) identification and prioritization of…

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PO
Terminology

PO Plant Ontology

Produces structured controlled vocabularies, arranged in ontologies, that can…

Produces structured controlled vocabularies, arranged in ontologies, that can be applied to plant-based database information even as knowledge of the biology of the relevant plant taxa is…

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modPhEA
Web

modPhEA MODel organism PHenotype Enrichment Analysis

Identifies enriched/depleted phenotypes of any one of six major model…

Identifies enriched/depleted phenotypes of any one of six major model organisms: Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Mus musculus, Homo sapiens.…

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FlyRNAi
Dataset

FlyRNAi

Serves a dual role, tracking both production of reagents for RNA interference…

Serves a dual role, tracking both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. FlyRNAi is used as a platform for community availability of…

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DroPhEA
Web

DroPhEA Drosophila Phenotype Enrichment Analysis

A core module of a web application that facilitates research in insect…

A core module of a web application that facilitates research in insect functional genomics through enrichment analysis on mutant phenotypes of fruit fly (Drosophila melanogaster). The phenotypes…

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MamPhEA
Web

MamPhEA Mammalian Phenotype Enrichment Analysis

A web application dedicated to understanding functional properties of mammalian…

A web application dedicated to understanding functional properties of mammalian gene sets based on mouse-mutant phenotypes. MamPhEA allows users to conduct enrichment analysis on predefined or…

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POEAS
Web

POEAS Plant Ontology Enrichment Analysis Server

A public web server for automated phenomic enrichment analyses of the genes of…

A public web server for automated phenomic enrichment analyses of the genes of A. thaliana. POEAS uses a simple list of genes/proteins as input and perform enrichment analysis and provide results and…

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