Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Phenotype ontologies

FYPO
Terminology

FYPO Fission Yeast Phenotype Ontology

Provides consistent computable descriptions of phenotype data in fission yeast.…

Provides consistent computable descriptions of phenotype data in fission yeast. FYPO uses several existing ontologies from the open biological and biomedical ontologies (OBO) collection. It organizes…

MP
Dataset

MP Mammalian Phenotype Ontology

A structured vocabulary for describing mammalian phenotypes and serves as a…

A structured vocabulary for describing mammalian phenotypes and serves as a critical tool for efficient annotation and comprehensive retrieval of phenotype data. MP Ontology contains broad and…

MicrO
Terminology

MicrO

An ontology of prokaryotic phenotypes and metabolic characters. MicrO was built…

An ontology of prokaryotic phenotypes and metabolic characters. MicrO was built to support the ongoing development of a natural language processing algorithm, Microbial Phenomics Information…

WPO
Terminology

WPO Worm Phenotype Ontology

Allows the curation of C. elegans phenotypes. WPO includes phenotypic data from…

Allows the curation of C. elegans phenotypes. WPO includes phenotypic data from other nematode species. It contains streamlined version of the ontology that provides a subset of the terms in the…

CMPO
Terminology

CMPO Cellular Microscopy Phenotype Ontology

Provides about 360 phenotype terms. CMPO can be used to annotate mitotic…

Provides about 360 phenotype terms. CMPO can be used to annotate mitotic phenotypes observed in live human cells, as well as cellular phenotypes from tissue microarrays of diseased tissues from both…

MorphoCol
Dataset

MorphoCol

Provides data about pathogenic bacterial morphotypes. MorphoCol enables the…

Provides data about pathogenic bacterial morphotypes. MorphoCol enables the macroscopic observation of morphotypes and the comparison of the morphological “output” of the species in different…

OMP
Terminology

OMP Ontology of Microbial Phenotypes

Aims to capture phenotypes in a set of appropriately defined fields containing…

Aims to capture phenotypes in a set of appropriately defined fields containing accessions or free text. OMP is a controlled vocabulary and structured language where all terms are well-defined…

TOP
Terminology

TOP Thesaurus Of Plant characteristics

Offers a terminology for major plant characteristics used in functional…

Offers a terminology for major plant characteristics used in functional ecology. TOP covers about 850 plant characteristics building on existing standards defined in the context of terminological…

FLOPO
Terminology

FLOPO FLOra Phenotype Ontology

Facilitates the integration and the analysis of the information contained in…

Facilitates the integration and the analysis of the information contained in Floras. FLOPO permits to describe traits of plant species found in Floras. It allows integration of qualitative trait data…

DPO
Terminology

DPO Drosophila Phenotype Ontology

Provides terms to curate phenotypes affecting behaviour and biological…

Provides terms to curate phenotypes affecting behaviour and biological processes such as cell division of Drosophila melanogaster. DPO is limited to about 200 high-level and commonly described…

MPATH
Terminology

MPATH

Permits to describe lesions that arise in laboratory mice. MPATH was…

Permits to describe lesions that arise in laboratory mice. MPATH was constructed ab initio by a group of clinical and veterinary pathologists in 2000 and has since been revised and augmented by an…

ORDO
Terminology

ORDO Orphanet Rare Disease Ontology

Provides a terminology for rare diseases derived from the Orphanet database.…

Provides a terminology for rare diseases derived from the Orphanet database. ORDO captures relationships between diseases, genes and other relevant features.

RS
Terminology

RS Rat Strain ontology

Permits to annotate rat strains in a standardized manner. RS reflects the…

Permits to annotate rat strains in a standardized manner. RS reflects the breeding history and genetic makeup of the strains to facilitate querying and retrieval, analysis and comparisons amongst…

APO
Terminology

APO Ascomycete Phenotype Ontology

Provides hierarchically structured terms for the phenotypes of Ascomycete fungi.

Provides hierarchically structured terms for the phenotypes of Ascomycete fungi.

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.