Allows semi-automatic phenotyping of growing seedlings from time-lapse images. HypoPhen was developed to accelerate and standardize hypocotyl-bending measurements. The software can measure the length and orientation of hypocotyls at the given time points. It performs computation and recording of the elongation and bending of the seedlings. HypoPhen can be adapted, by researchers, to their specific need.
Allows users to describe and compare leaf shapes perimeters. LEAFPROCESSOR process bending energy analysis to quantifies the changes in leaf parameter deformation. The principal functions of this software are: (1) organization of the image data, (2) segmentation of leaves in an image, (3) assignment of shape attributes, (4) cluster analysis, (5) classification and (6) creation of regression models.
Allows quantitative analysis of high-throughput plant phenotyping data. IAP handles different image sources and assists in organizing phenotypic data by retaining the metadata from the input in the result data set. It provides approaches for data management, image analysis, and result handling for large-scale experiments. IAP includes image-analysis pipelines to examine various traits for other species, such as Arabidopsis, wheat, and barley, and can be adapted to process imaging data from different monitoring systems and camera types.
Allows high-throughput image analysis for plant biologists. Image Harvest is an open-source and flexible framework for processing and analyzing plant images, such as conventional color and fluorescence images. The software allows the simplification of the collection of metadata from the organizational structure of raw image databases. It provides an option for implementing basic statistical functions, as well as several definitions of digital traits to describe plant growth, morphology, and physiological responses.
Measures selected two-dimensional traits from plant images. PhenoPhyte can (1) process images sequences, track objects across images, report temporally varying traits such as growth and herbivory; (2) process choice assay experiments and (3) automatically adjust for variations in scale and lighting. This software is compatible with images of individual leaves and rosettes and allows multiple objects in one frame.
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