PheWAS-View statistics

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PheWAS-View specifications

Information


Unique identifier OMICS_11754
Name PheWAS-View
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input format text
Output data Images
Output format PNG, JPG, PDF
Programming languages Ruby
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Scott Dudek <>

Information


Unique identifier OMICS_11754
Name PheWAS-View
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input format text
Output data Images
Output format PNG, JPG, PDF
Operating system Unix/Linux, Mac OS, Windows
Programming languages Ruby
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
RMagick
Maintained Yes

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Documentation


Maintainer


  • person_outline Scott Dudek <>

Publication for PheWAS-View

PheWAS-View in publications

 (3)
PMCID: 5854600
PMID: 29545597
DOI: 10.1038/s41598-018-22834-4

[…] filter 2 and 3 in the icd-9 based associations and 6 associations for the laboratory measures t indicating that these associations were mostly influenced by lof and deleterious variants., the phewas-view plot in fig. represents the common results identified from all functionally annotated filters, with minimum number of cases 501 (track 3 in fig. ). among the top most significant […]

PMCID: 4256091
PMID: 25474351
DOI: 10.1371/journal.pgen.1004678

[…] and 7) direction of effect. for each of these consistent associations, we examined tests of association results for combined nhanes. significant phewas results were then plotted using phenogram and phewas-view, software specifically developed for visualization of phewas results (http://ritchielab.psu.edu/ritchielab/software/). the expanded results for all 69 results meeting our phewas […]

PMCID: 3561060
PMID: 23382687
DOI: 10.1371/journal.pgen.1003087

[…] data sharing. all results were then imported into a relational database (mysql). the database was also used to match previously reported gwas data with the snps analyzed in this study., the software phewas-view was developed for data visualization of the phewas results as well as for plotting “sun plots” . synthesis-view , was also used to present results within this manuscript. both software […]


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PheWAS-View institution(s)
Center for Systems Genomics, Department of Biochemistry and Molecular Biology, Eberly College of Science, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA; Center for Human Genetics Research, Vanderbilt University Medical Center, Nashville, TN, USA; Department of Molecular Physiology & Biophysics, Vanderbilt University Medical Center, Nashville, TN, USA
PheWAS-View funding source(s)
This work was funded by the following grants: LM010040, HG004798, and U01HG004798.

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