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PhIN specifications


Unique identifier OMICS_23112
Name PhIN
Restrictions to use Academic or non-commercial use
Database management system PostgreSQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Content license CC Attribution-NonCommercial-NoDerivs
Maintained No


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Publication for PhIN

PhIN citations


High Diversity of Myocyanophage in Various Aquatic Environments Revealed by High Throughput Sequencing of Major Capsid Protein Gene With a New Set of Primers

Front Microbiol
PMCID: 5943533
PMID: 29774020
DOI: 10.3389/fmicb.2018.00887

[…] at cyanophage MCP gene fragments were predominant (>92%) in the top-200 hit list with a length of 145-bp. Some 142-bp, 148-bp fragments were related to non-cyanophages, including Sinorhizobium phages phiN3 and phiM12, Pseudomonas phage pf16, Acidovorax phage ACP17, and Ralstonia phage RSP15, a freshwater phage from Baikal Lake, which is related to Polynucleobacter ().Maximum likelihood phylogeneti […]


Biomechanics of Tetrahymena escaping from a dead end

PMCID: 5832702
PMID: 29491169
DOI: 10.1098/rspb.2017.2368
call_split See protocol

[…] e rp = (xp, yp) along each trajectory. Positions r1, r2, r3 and r4 in c were then defined as positions at 0.45 s before, 0.14 s before, 0.14 s after and 0.45 s after xp, respectively. The entry angle ϕin was defined as the angle between vector r2 − r1 and x, and the reflection angle ϕout was defined as the angle between vector r4 − r3 and x, as shown in c. The change in angle dϕ was defined as dϕ […]


Mineral Ecology: Surface Specific Colonization and Geochemical Drivers of Biofilm Accumulation, Composition, and Phylogeny

Front Microbiol
PMCID: 5368280
PMID: 28400754
DOI: 10.3389/fmicb.2017.00491

[…] eciprocal Simpson dominance index (D) gives more weight to dominant OTUs by expressing the likelihood that two individuals, chosen at random, will belong to different OTUs. The effect of geochemical (pHin, pHout, C-P Availability) and mineralogical (mineral geochemistry, P-Availability, Buffering Capacity) variations on microbial community diversity was assessed at rarefication depths according to […]


Coupling of remote alternating access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB

PMCID: 4359379
PMID: 25248080
DOI: 10.7554/eLife.03145.033
call_split See protocol

[…] ; and arginine, 12.0. Residues on the periplasmic side of the protein were assumed to exchange protons with a solution at pHout = 5.5, while those on the cytoplasmic side exchanged with a solution at pHin = 7.5; interpolated pH values in this range were used for residues across the membrane. Calculations with an alternative value of pHout = pHin = 7.5 led to analogous conclusions (not shown). […]


Carbohydrate Active Enzymes in Pythium and Their Role in Plant Cell Wall and Storage Polysaccharide Degradation

PLoS One
PMCID: 3772060
PMID: 24069150
DOI: 10.1371/journal.pone.0072572

[…] . Our analysis revealed the interspecific diversity of the Pythium-CAZyomes and the comparison with the CAZyome of three Phytophthora species (Ph. ramorum (Phra), Ph. sojae (Phso), and Ph. infestans (Phin)) and Hyaloperonospora arabidopsidis (Ha) provided an indication on how CAZyme genes evolved in the peronosporalean lineage. […]


Accelerating Public Health Situational Awareness through Health Information Exchanges: An Annotated Bibliography

PMCID: 3615759
PMID: 23569582
DOI: 10.5210/ojphi.v2i2.3212

[…] /Magruder C, Brady J, Dobbs D, Grannis S, Le LH. Enhancing Public Health Capabilities Through Health Information Exchanges - A New Five-Year Initiative in New York, Indiana and Washington/Idaho. 2008 PHIN Annual Conference, August 2008. Summary : A presentation by each HIE of the individual and collaborative vision of enabling bi-directional sharing of clinically relevant information to improve […]


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PhIN institution(s)
State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin, China; High-Throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biomedicine and Technology, Tianjin, China
PhIN funding source(s)
Supported by the National Basic Research Program (973 Program, No. 2011CBA00800 and No. 2013CB911100).

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