PhiSiGns specifications

Information


Unique identifier OMICS_10230
Name PhiSiGns
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements
BioPerl, BLAST, CLUSTALW
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Bhakti Dwivedi

Information


Unique identifier OMICS_10230
Name PhiSiGns
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Bhakti Dwivedi

Publication for PhiSiGns

PhiSiGns citations

 (2)
library_books

Viral Communities Associated with Human Pericardial Fluids in Idiopathic Pericarditis

2014
PLoS One
PMCID: 3972187
PMID: 24690743
DOI: 10.1371/journal.pone.0093367

[…] ers from literature were used when available , . Otherwise, specific primers for the bacteriophages detected in silico were designed by Primer-BLAST (http://www.ncbi.nlm.nih.gov/tools/primer-blast/), PhiSigns or Primer3, followed by BLAST verification of primers' specificity . PCRs were performed on the Genomiphi-amplified DNA from each sample. […]

library_books

De MetaST BLAST: A Tool for the Validation of Degenerate Primer Sets and Data Mining of Publicly Available Metagenomes

2012
PLoS One
PMCID: 3506598
PMID: 23189198
DOI: 10.1371/journal.pone.0050362

[…] se a nucleotide or amino acid alignment of the genetic target are available to aid in the initial development of degenerate primer sets (e.g., Amplicon , CODEHOP –, DEFOG , DePiCt , HYDEN , MAD-DPD , PhiSiGns , and Primaclade ). In addition, manual identification of conserved regions from aligned sequences generated using software such as ARB , ClustalX , and MEGA is also common practice (e.g., – […]

PhiSiGns institution(s)
College of Marine Science, University of South Florida, St Petersburg, FL, USA

PhiSiGns reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PhiSiGns