Phobius pipeline

Phobius specifications

Information


Unique identifier OMICS_03888
Name Phobius
Interface Web user interface
Restrictions to use None
Parallelization CUDA
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Additional information


A standalone version is available for academic users only, on request.

Information


Unique identifier OMICS_03888
Name Phobius
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Protein sequence
Input format FASTA
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Medium
Version 1.01
Stability Stable
Requirements Perl

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Documentation


Additional information


A standalone version is available for academic users only, on request.

Publications for Phobius

Phobius citations

 (2)
2018
PMCID: 5820362

[…] with mega7.0 software (tamura et al., 2013) using the maximum likelihood method with 1000 bootstrap replicates. the prediction of membrane-spanning regions and orientation was performed using phobius software (käll et al., 2004)., the 5-week old tobacco plants (obtained as described in the section “plant material and growth conditions”) were grown for the next 4 days in the control […]

2014
PMCID: 4302439

[…] before performing phylogenetic analysis to obtain stable and consistent topologies. therefore, we examined these 282 gpcrs for the presence of seven transmembrane (tm) helices using hmmtop and phobius servers. to remove fragments and false positives we excluded the sequences having less than five or more than eight tm regions from the final dataset. to cross verify the list of sponge […]

Phobius institution(s)
Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden; Department of Molecular Biology, University of Copenhagen, Copenhagen, Denmark

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