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Phoenix specifications


Unique identifier OMICS_14753
Name Phoenix
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Input data A set of multiple FASTA-formatted files and matching quality files, respectively, where each FASTA file contains the sequence information from a particular sample.
Input format FASTA
Output data OTUs, taxonomic annotations, and sample relation trees
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, Perl
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes



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  • person_outline Jung Soh <>

Publication for Phoenix

Phoenix in publications

PMCID: 4840303
PMID: 27148240
DOI: 10.3389/fmicb.2016.00562

[…] and palmitate/stearate-degrading enrichments and under srx1585942 (c16) and srx1585943 (c18) for the n-alkane-amended enrichments., analysis of 16s rrna gene pyrotag data was carried out using the phoenix 2 pipeline (). briefly, quality control was performed to remove low quality and chimeric sequences. dereplication was performed (99% identity threshold) and sequences were clustered into otus […]

PMCID: 4707241
PMID: 26793176
DOI: 10.3389/fmicb.2015.01538

[…] the invitogen qubit fluorometer again, amplicons were sent to genome quebec and mcgill university innovation centre (montreal, qc) for 16s rrna pyrosequencing., analyses of data were done with the phoenix2 software package, where data were subjected to stringent quality control (qc) checks (soh et al., ). this included matching primer sequences, matching adaptor sequences, and removing […]

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Phoenix institution(s)
Visual Genomics Centre, Faculty of Medicine, University of Calgary, Calgary, AB, Canada; Petroleum Microbiology Research Group, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
Phoenix funding source(s)
This work was supported by funding from Genome Canada, Genome Alberta, the Government of Alberta and Genome BC.

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