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PHOSIDA specifications

Information


Unique identifier OMICS_02428
Name PHOSIDA
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Phosida

Maintainer


  • person_outline Matthias Mann

Publications for PHOSIDA

PHOSIDA citations

 (45)
library_books

Identification of a novel cAMP dependent protein kinase A phosphorylation site on the human cardiac calcium channel

2017
Sci Rep
PMCID: 5680263
PMID: 29123182
DOI: 10.1038/s41598-017-15087-0

[…] To predict the most probable site for protein kinase A phosphorylation, a comparative study of available phosphorylation databases (Kinexus PhosphoNET, PhosphoSitePlus, PHOSIDA) and trials of in silico phosphorylation site prediction programs (NetPhosK 1.0, NetworKin, pkaPS, GPS 2.1, PPSP, Scansite,) were used to predict the most likely PKA substrate sites. Consideri […]

library_books

Cip29 is phosphorylated following activation of the DNA damage response in Xenopus egg extracts

2017
PLoS One
PMCID: 5513483
PMID: 28715428
DOI: 10.1371/journal.pone.0181131

[…] ying the site of the DDR-dependent phosphorylation on Cip29, we analysed the entire Cip29 sequence for potential phosphorylation sites using four different phospho-site prediction tools; NetPhos 2.0, PHOSIDA, KinasePhos 2.0 and Scansite () [–]. This analysis revealed a number of potential phosphorylation sites distributed throughout the protein, fifteen of which were identified by at least three o […]

library_books

Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand specific Phosphosignaling in Mammary Luminal Epithelial Cells *

2017
PMCID: 5383782
PMID: 28174229
DOI: 10.1074/mcp.M116.061267

[…] ed to predict specific kinases for the differentially regulated phosphopeptides (≥1.5-fold change) with a site localization probability of ≥0.75. Phosphosites were matched to the Phosphosite Plus and Phosida databases to examine novelty. […]

library_books

RIC 3 phosphorylation enables dual regulation of excitation and inhibition of Caenorhabditis elegans muscle

2016
Mol Biol Cell
PMCID: 5042584
PMID: 27489343
DOI: 10.1091/mbc.E16-05-0265

[…] C-3; ). Thus UNC-43 is unlikely to target RIC-3 Ser-164.Casein kinase II (KIN-10) was shown to function opposite to TAX-6 in C. elegans cilia (). Furthermore, bioinformatics (scansite.mit.edu and www.phosida.com; Supplemental Table S2) suggests several casein kinase II targets within RIC-3, including Ser-164. To examine whether KIN-10 is likely to function opposite to TAX-6 in body-wall muscle, we […]

library_books

Proteomic discovery of host kinase signaling in bacterial infections

2016
Proteomics Clin Appl
PMCID: 5096009
PMID: 27440122
DOI: 10.1002/prca.201600035

[…] context. Publically available protein modification databases comprising large sets of experimentally verified phosphorylation sites of diverse species include PhosphoSitePlus (www.phosphosite.org ), PHOSIDA (www.phosida.com and Phospho.ELM (http://phospho.elm.eu.org ). PhosphoSitePlus currently contains approximately 265 000 reported phosphosites for which associated information, including impli […]

library_books

Tale of a multifaceted co activator, hADA3: from embryogenesis to cancer and beyond

2016
Open Biol
PMCID: 5043578
PMID: 27605378
DOI: 10.1098/rsob.160153

[…] ross species. Figure 4.The tools employed to predict the potential PTM sites are as follows: for phosphorylation, disorder-enhanced phosphorylation sites predictor (DISPHOS) [], NetPhos v. 2.0 [] and Phosida []; for ubiquitination, UbPred [], BDM-PUB (http://bdmpub.biocuckoo.org) and CKSAAP []; for SUMOylation, SUMOplot (http://www.abgent.com/sumoplot) and SUMOsp v. 2.0 []; for acetylation, ASEB [ […]

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PHOSIDA institution(s)
Department for Proteomics and Signal Transduction, Max-Planck Institute for Biochemistry, Am Klopferspitz, Martinsried, Germany
PHOSIDA funding source(s)
National Institutes of Health Grant R01 GM081578-02 on “Complex dynamics in multisite phosphorylation”; PROSPECT, a 7th framework program of the European Union (grant agreement HEALTH-F4-2008-201648/PROSPECTS)

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