PHOSITE statistics

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Citations per year

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

PHOSITE specifications


Unique identifier OMICS_05928
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability No
Maintained No


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Publication for PHOSITE

PHOSITE in publications

PMCID: 5424413
PMID: 28486929
DOI: 10.1186/s12860-017-0138-8

[…] determined the phosphorylation sites by liquid chromatography (lc)-tandem quadrupole mass spectrometry. putative phosphorylation sites shown in fig. were identified from the peptide by mascot phosite. phosphors probability indicated the probability of amino acid residues indicated are the ones containing the phosphate. human sec23a sequence (accession number q15436.2, gi:143,811,354) […]

PMCID: 3380725
PMID: 22759584
DOI: 10.1186/1477-5956-10-S1-S7

[…] tools for predicting phosphorylation sites have been reported []. these methods can be roughly grouped into two categories: kinase-specific predictors (e.g. scansite [], predphospho [], phosite [], netphosk [], gps[], kinasephos [], ppsp []) and non-specific predictors (e.g. netphos [], disphos []). given a protein sequence, the non-specific methods can only predict whether […]

PMCID: 2291461
PMID: 18366741
DOI: 10.1186/1472-6807-8-19

[…] markov models (kinasephos 1.0 [,]), support vector machines (predphospho and kinasephos 2.0 [-]), bayesian decision theory (ppsp []), and other forms of sequence profile analysis (scansite 2.0, phosite, gps [-]). such predictors perform particularly well when kinase specificities are taken into account [], or when species-dependence is included []. experimental studies of phosphorylation […]

PMCID: 1924601
PMID: 17668044
DOI: 10.1371/journal.pone.0000656

[…] tools such as prosite and elm . this type of strategy searches for instances of phosphorylation consensus motifs represented by regular expressions. other algorithms, such as scansite and phosite utilize position-specific profile searches, which allow for more flexible definitions of consensus motifs –. machine learning approaches, (e.g. hidden markov models – and artificial neural […]

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PHOSITE institution(s)
CeVis, University of Bremen, Bremen, Germany; AgeLab Pharma GmbH, Hamburg, Germany

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